RnoEX0021455 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34498749-34515432:+
Coord C1 exon
chr13:34498749-34498850
Coord A exon
chr13:34501923-34502090
Coord C2 exon
chr13:34515329-34515432
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCATTCTGCTTCACTTTTAGCTG
3' ss Score
9.21
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TCCGCACCAGACGGCAGAGCTCCGGGAGCACCACCAATGTTGCCTCCACATCCTCCGACAGTCGGGGCCGCAGTCGAGCCAAAGTGGTTTCACAGTCTCAGC
Seq A exon
CTGGCAGCCGGTCAAGTTCCCCCGGGAAGCTTTTGGGAAGTGGTTATGGTGGACTCGCTGGGGGCTCCTCAAGAGGCCCACCTGTAACACCATCTTCAGAGAAGAGAAGCAAGATCCCCAGGAGTCAGGGATGCAGCCGAGAAACAAGCCCTAACCGGATTGGATTAG
Seq C2 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGGATCCCTGGTTCTGTGAGCGCCATGCGAGTCTTGAGTACCAGCACAGACCTGGAAGCCGCTGTGGCCGACGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376-'46-47,'46-41,48-47
Average complexity
C2
Mappability confidence:
71%=60=78%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACGGCAGAGCTCC
R:
AGCGGCTTCCAGGTCTGT
Band lengths:
186-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]