BtaEX6093210 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7863552-7870167:-
Coord C1 exon
chr22:7870066-7870167
Coord A exon
chr22:7864104-7864274
Coord C2 exon
chr22:7863552-7863659
Length
171 bp
Sequences
Splice sites
3' ss Seq
TATCTGTGTTTGGTGTTCAGCTG
3' ss Score
7.28
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCCGGGTGAGAGCAAAGCTTTCAGCACCACTTGCTAGTATGGGAAATGCCAAGACAGATTCCAGAGGAAGAAGTCGAACAAAGATGGTGTCTCAGTCACAGC
Seq A exon
CTGGCAGCCGGTCTGGTTCTCCAGGCAGAGTTCTGACCACAACAGCCCTCTCCACTGTGAGCTCTGGTGTTCAGAGAGTCCTGGTTAATTCAGCCTCCACACAGAAGAGAAGCAAGATACCCCGAAGCCAGGGCTGTAGCAGAGAGGCCAGTCCATCTCGGCTCTCAGTGG
Seq C2 exon
CCCGAAGCAGTCGGATTCCTCGGCCAAGCGTGAGTCAAGGGTGCAGCCGGGAAGCCAGCCGGGAGAGCAGCAGGGATACGAGTCCTGTGCGCTCTTTCCAGCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-'33-34,'33-33,36-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGTGAGAGCAAAGC
R:
CAAGGGGCTGGAAAGAGCG
Band lengths:
210-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]