MmuEX0011528 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113771304-113779848:+
Coord C1 exon
chr9:113771304-113771405
Coord A exon
chr9:113777666-113777836
Coord C2 exon
chr9:113779741-113779848
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTTTCCCGTGTAGCTG
3' ss Score
9.94
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTCGGGTGAGAGCCAAGCTTTCTACACCGCTTGTTGCTGTGGGAAATGCCAAGACCGACTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGC
Seq A exon
CTGGCAGCCGATCTGGGTCTCCAGGAAGAGTTCTAACCACAACAGCCCTCTCTACTGTGAGCTCTGGTGCTCAACGAGTCCTGGTCAATTCAGCTTCAGCACAGAAGAGAAGCAAGATCCCAAGGAGCCAGGGCTGCAGCAGAGAGGCCAGCCCATCTCGGCTCTCAGTGG
Seq C2 exon
CCCGGAGCAGCCGTATTCCTCGGCCGAGTGTGAGTCAAGGCTGTAGCCGGGAAGCCAGCAGAGAGAGCAGCAGGGACACGAGTCCGGTGCGCTCCTTCCAGCCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'28-32,'28-30,31-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAGAGCCAAGCTTTCTAC
R:
GAAGGAGCGCACCGGACTC
Band lengths:
197-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: