GgaEX6019748 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45292104-45298720:-
Coord C1 exon
chr2:45298619-45298720
Coord A exon
chr2:45293181-45293351
Coord C2 exon
chr2:45292104-45292211
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCATTTTGCCTTCAGCTG
3' ss Score
8.93
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCGTATACGAACAAAGCTTTCAACACCTTCTCTTGGCATTGGAAATTCTAAAACAGATTCCAGAGGACGGAGTAGAACCAAAGTGGTCTCTCAGTCTCAGC
Seq A exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
Seq C2 exon
CACGAGGCAGCCGCATTCCTCGGCCTAGTGTGAGTCAGGGGTGCAGTCGGGAGGCCAGCCGTGAAAGTAGCAGGGACACGAGCCCTGTCCGCTCTTTTCCACCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'56-67,'56-66,59-67=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAACAAAGCTTTCAACACCT
R:
CAAGGGGTGGAAAAGAGCGG
Band lengths:
203-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]