RnoEX6038045 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122123051-122131159:+
Coord C1 exon
chr8:122123051-122123152
Coord A exon
chr8:122129371-122129541
Coord C2 exon
chr8:122131052-122131159
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTATGTGTTTCCTGTTTAGCTG
3' ss Score
9.32
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCGGGTGAGAGCCAAGCTTTCTACACCACTTGTTGCTGTGGGAAATGCCAAGACCGATTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGC
Seq A exon
CTGGCAGCAGATCTGGGTCTCCGGGAAGAGTTCTAACCACAACAGCCCTCTCTACTGTGAGCTCTGGTGCTCAACGAATCCTGGTCAATTCAGCTTCAGCACAGAAGAGAAGCAAGATACCAAGGAGCCAGGGCTGCAGCAGAGAGGCCAGCCCATCTAGGCTTTCAGTGG
Seq C2 exon
CCCGGAGCAGCCGGATTCCTCGGCCGAGTGTGAGTCAAGGCTGTAGCCGGGAAGCTAGCCGAGAGAGCAGCAGGGACACAAGTCCGGTCCGCTCTTTCCAGCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'38-40,'38-39,42-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGTGAGAGCCAAGCTTT
R:
CAAGGGGCTGGAAAGAGCG
Band lengths:
210-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]