DreEX0021953 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43196730-43200659:+
Coord C1 exon
chr19:43196730-43196771
Coord A exon
chr19:43197457-43197564
Coord C2 exon
chr19:43200553-43200659
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGGGGGTGGGTCAGCGA
3' ss Score
0.24
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CGCCTTCAAACATCAGCCACATCTACAACGGATCAAAAGGAG
Seq A exon
CGAGGGGTAGTCGTATACCACGGCCTAGTGTGAGTCAGGGCTGCAGTCGCGAGGCCAGCCGAGAGAGCAGCAGAGACACCAGCCCTGTGCGCTCCTTCACGCCGCTCG
Seq C2 exon
GTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTGTCATCTTCAGTTAGTGCCATGAGAGTCTTGAACACCGGATCTGACGTGGAGGAAGCCCTGGCAGATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345_MULTIEX1-5/6=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTCAAACATCAGCCACA
R:
GAGCATCTGCCAGGGCTTC
Band lengths:
147-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]