HsaEX0015493 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33617661-33626412:-
Coord C1 exon
chr3:33626242-33626412
Coord A exon
chr3:33623313-33623420
Coord C2 exon
chr3:33617661-33617767
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTGCTTCACACCAGCCC
3' ss Score
5.54
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGGTAGCCGGTCTGGGTCTCCAGGAAGAGTTCTGACCACAACAGCCCTGTCCACTGTGAGCTCTGGTGTTCAAAGAGTCCTGGTCAATTCAGCCTCAGCACAAAAAAGAAGCAAGATACCACGGAGCCAGGGCTGTAGCAGAGAGGCTAGTCCATCTAGGCTTTCAGTGG
Seq A exon
CCCGAAGCAGTCGTATTCCTCGACCAAGTGTGAGTCAAGGATGCAGCCGGGAAGCTAGTCGGGAGAGCAGCAGAGACACAAGTCCTGTTCGCTCTTTTCAGCCCCTCG
Seq C2 exon
GTCCAGGTTATGGGATCAGCCAATCAAGTCGACTGTCGTCTTCTGTTAGTGCCATGCGAGTCCTGAACACAGGTTCTGATGTGGAGGAGGCGGTGGCAGATGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-'45-52,'45-49,46-52
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTCCAGGAAGAGTTCTG
R:
GCCTCCTCCACATCAGAACCT
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)