BtaEX0009139 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7858818-7864274:-
Coord C1 exon
chr22:7864104-7864274
Coord A exon
chr22:7863552-7863659
Coord C2 exon
chr22:7858818-7858924
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGCCATTGCTTCATGCCAGCCC
3' ss Score
5.27
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTGGCAGCCGGTCTGGTTCTCCAGGCAGAGTTCTGACCACAACAGCCCTCTCCACTGTGAGCTCTGGTGTTCAGAGAGTCCTGGTTAATTCAGCCTCCACACAGAAGAGAAGCAAGATACCCCGAAGCCAGGGCTGTAGCAGAGAGGCCAGTCCATCTCGGCTCTCAGTGG
Seq A exon
CCCGAAGCAGTCGGATTCCTCGGCCAAGCGTGAGTCAAGGGTGCAGCCGGGAAGCCAGCCGGGAGAGCAGCAGGGATACGAGTCCTGTGCGCTCTTTCCAGCCCCTTG
Seq C2 exon
GTCCGGGGTATGGGATCAGCCAATCAAGCCGACTGTCATCCTCGGTCAGTGCCATGCGAGTCCTGAACACAGGTTCCGACGTGGAGGAGGCAGTGGCAGATGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333_MULTIEX1-8/14=7-10
Average complexity
C1
Mappability confidence:
82%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTCCAGGCAGAGTTCT
R:
CTCCACGTCGGAACCTGTGTT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development