BtaEX0009140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7858818-7863659:-
Coord C1 exon
chr22:7863552-7863659
Coord A exon
chr22:7859899-7859961
Coord C2 exon
chr22:7858818-7858924
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTATGGTCCTGTTATTCCAGCCT
3' ss Score
3.48
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CCCGAAGCAGTCGGATTCCTCGGCCAAGCGTGAGTCAAGGGTGCAGCCGGGAAGCCAGCCGGGAGAGCAGCAGGGATACGAGTCCTGTGCGCTCTTTCCAGCCCCTTG
Seq A exon
CCTCCAGACACCATTCCAGATCCACTGGTGCCCTCTACGCCCCCGATGTGTATGGGGTCTCAG
Seq C2 exon
GTCCGGGGTATGGGATCAGCCAATCAAGCCGACTGTCATCCTCGGTCAGTGCCATGCGAGTCCTGAACACAGGTTCCGACGTGGAGGAGGCAGTGGCAGATGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333_MULTIEX1-9/14=8-10
Average complexity
C1
Mappability confidence:
80%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015071fB1748
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCAGTCGGATTCCTCG
R:
CAGTCGGCTTGATTGGCTGAT
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development