RnoEX0021504 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122131052-122137102:+
Coord C1 exon
chr8:122131052-122131159
Coord A exon
chr8:122136023-122136085
Coord C2 exon
chr8:122136996-122137102
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTATGGTCCTGTTATTCCAGCCT
3' ss Score
3.48
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CCCGGAGCAGCCGGATTCCTCGGCCGAGTGTGAGTCAAGGCTGTAGCCGGGAAGCTAGCCGAGAGAGCAGCAGGGACACAAGTCCGGTCCGCTCTTTCCAGCCCCTTG
Seq A exon
CCTCCAGACACCATTCCAGATCCACTGGTGCCCTCTACGCCCCCGATGTGTGTGGGGCCGCAG
Seq C2 exon
GTCCAGGATATGGGATGAGCCAGTCAAGCCGGTTGTCATCCTCTGTCAGTGCCATGCGGGTCCTAAACACAGGCTCCGATGTGGAAGAGGCGGTAGCTGATGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091980fB3157
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGAGTCAAGGCTGTAGC
R:
TGGCACTGACAGAGGATGACA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]