GgaEX0017984 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44734444-44740304:-
Coord C1 exon
chr2:44740204-44740304
Coord A exon
chr2:44735704-44735766
Coord C2 exon
chr2:44734444-44734550
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTATGATCCTGTTATTGCAGCTT
3' ss Score
4.86
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CAGCCGCATTCCTCGGCCTAGTGTGAGTCAGGGGTGCAGTCGGGAGGCCAGCCGTGAAAGTAGCAGGGACACGAGCCCTGTCCGCTCTTTTCCACCCCTTG
Seq A exon
CTTCCAGACATCACTCCAGATCCACTGGTGCCCTCTACGCTCCTGATGCTTATGGGGCTACAG
Seq C2 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'45-47,'45-46,46-47
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTAGCAGGGACACGAGC
R:
TCTGCTACTGCCTCTTCCACA
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]