HsaEX0015504 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33617661-33623420:-
Coord C1 exon
chr3:33623313-33623420
Coord A exon
chr3:33618694-33618756
Coord C2 exon
chr3:33617661-33617767
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTATGGTCCTGTTATTCCAGCCT
3' ss Score
3.48
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CCCGAAGCAGTCGTATTCCTCGACCAAGTGTGAGTCAAGGATGCAGCCGGGAAGCTAGTCGGGAGAGCAGCAGAGACACAAGTCCTGTTCGCTCTTTTCAGCCCCTCG
Seq A exon
CCTCCAGACACCATTCCAGATCAACTGGTGCCCTCTACGCCCCCGAAGTGTATGGGGCCTCAG
Seq C2 exon
GTCCAGGTTATGGGATCAGCCAATCAAGTCGACTGTCGTCTTCTGTTAGTGCCATGCGAGTCCTGAACACAGGTTCTGATGTGGAGGAGGCGGTGGCAGATGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539_MULTIEX4-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCAGAGACACAAGTCC
R:
GCCTCCTCCACATCAGAACCT
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)