DreINT0047213 @ danRer10
Intron Retention
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43196730-43197564:+
Coord C1 exon
chr19:43196730-43196771
Coord A exon
chr19:43196772-43197456
Coord C2 exon
chr19:43197457-43197564
Length
685 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTTCTTGGGGGTGGGTCAGCGA
3' ss Score
0.24
Exon sequences
Seq C1 exon
CGCCTTCAAACATCAGCCACATCTACAACGGATCAAAAGGAG
Seq A exon
GTATGTTTTAGGGCATTTTTATTTGCCTTGGTCTCTGCCAGCCATCCCATAACAATAATCCATCCGCCTGCCTGAGCTGGGGCTGTCATCCTAATGGTGTTTCATGCTGGAGGTTGTGCTTTGTTGCGTGTAACACGCTGCTTTTGGGAAAGCAGGAAGTGCCGTCACATTAACCTGCTGGGTCTTCTCTTGTCTGCTGTGATATTAAACCCCACAGCTGCGCTTGGTGCTGCTTTTTACAAAATAAACGAACGAATGAATGAATGAAGTCCATCTCATGAATGCAGATGAACGATGAACATTGGTGAACAAGAGATGAGAAATAAAAGTTCCAGACCCGCCACCTCCCATTTATTAACATTCACCCTTTAACTCTGATCCTTCTCATTCTCTGTCAGTGAATGTCTGCTACTTTCTAATCTGTTCCTTTAATGAGGAACCTGTGCATGAACTCTTAATATTAATGTGCTTCCTTGCTCGTTTCTGTAAGGTTCCTCAGGGCTCAATTTTGGGCCCTCTTTTTTTTCCCTTGAAAATGTGTGTAAGTCCATTGTCTTTTCAGTGTTTTAAATACAGCTTTTCTCTGCTCCTTTGTCTGTCTGTTGTACTTTCCAATGCTTTTGTTCTTCTTTATCTTTGTGTTTTTCTCTGCTCTTTTCTTGGTGTTTTCTTGGGGGTGGGTCAG
Seq C2 exon
CGAGGGGTAGTCGTATACCACGGCCTAGTGTGAGTCAGGGCTGCAGTCGCGAGGCCAGCCGAGAGAGCAGCAGAGACACCAGCCCTGTGCGCTCCTTCACGCCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345:ENSDART00000144557:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]