HsaINT0035761 @ hg19
Intron Retention
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33623313-33626412:-
Coord C1 exon
chr3:33626242-33626412
Coord A exon
chr3:33623421-33626241
Coord C2 exon
chr3:33623313-33623420
Length
2821 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGCTGTTGCTTCACACCAGCCC
3' ss Score
5.54
Exon sequences
Seq C1 exon
CTGGTAGCCGGTCTGGGTCTCCAGGAAGAGTTCTGACCACAACAGCCCTGTCCACTGTGAGCTCTGGTGTTCAAAGAGTCCTGGTCAATTCAGCCTCAGCACAAAAAAGAAGCAAGATACCACGGAGCCAGGGCTGTAGCAGAGAGGCTAGTCCATCTAGGCTTTCAGTGG
Seq A exon
GTAAGATTTTTTTTTTTTTTTTATGTGAGACATGTAACCCTTTTTTTTTTTTTTTCAGGCTTTGGCAGCATTGAAGACTTTGGAATACAATTAGGACTTACAAATTAGAAGAAAATAACTTAAAAATTCAACAATTGAAGAATAGTTTATGAGTTGAATTAGGTATCTTAAATGTGTAATTCAGGGCCTGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATACCCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGTGGCTGAGGCAGGAGAATCTTTTGAACCTGGGGTGGAGGCTGCAGTGAGCCAAGATCACACTGCACTCCAGCCTGGGCAACGGAGACTCTGTCTCAAAAAAAAAAAAAAAAACCCAAAACAAAACAAACAAACCCTATAATTCATAGGAGCTTTGAAAAATATAGCTAGTACTTTAAAGGAAAAGGTTATTGTGGAATTTTATAACATATTTATCACATATACACATATATACACAGTTTCTTGTGTGTTTGACATTCGTGTTATAGTTCAGCCCTATTCAAATACTAGTAAACTTTAATATTTTCTCTGTGTATTGATTAGGATACTTTCAATTTCAGATAATAGTAATGATAGATGAAGCCAGCTTAAACATTAAAAATGGATTTATTAGTTAAGTTTGAAGATTGTACGGCCTTCAGGATTGACTAATTAACATTGCTATGATGAACCCAAAATCTGCCTATTTTCCCTTTCTCTCACTCTCTCTTCCTTCTTTTCTGCTTTATCAACCATGTTGCTGACTTTGTCCTTAGGATAGCTGCTACTTGATCCGTCATTTCCAGAGCAGAAAGCCCCTAATTATTCCAGTTTATTTTTAATAATTTTTTTTATTGTTTTAAGTCTTTTGCAGATTACCTATGTAACTTTAAAAAATATTCTCATATTTAAAGAAAATACTCATATTTCTATTTCTTGTTTCGTCAACCTCAATCAGTATCTCAACTTCCATACTTTTTCCTTCACCTTCCACTCTTAGAGTTATCAATTTTTACATTATTAAAGTTTACACATACATTTTCTTCTGTATCCACAAGCAAGTCTTATGTACTTGTTCCATAAGTTGGCTTTAAAAGATGAAAAGCTGTAAATAACATATACTGTGTTATGAGTAAATGAATGTTGTTTGCAGCCAAGACACCTAGTGTACTGTGAACCCATTTCTTCCCAAAGGTACAGTGAGTTCCCTAGGGACCACTTGAAGGAGAGTGTTCCTGTTATAAGGAGATGAATTCTCTTTCCTTACATTCCTACCAGTTATTTACTTATGTCATTATAACTTATACCAGTTATTTACTTATTATGCCACGTTTTCATTTGCTGTGTATATAGAAAGTGACTAAGAATAGTGTGCACTTCTCATATCCTTTAGGATTGCTTTCCCTTCAGTATTGCTGAAAGGAAATATGCAGTTCCTTATTTTTTCCAGACTTTCTTTTCAGTTCTCTCTGGATTAGTTGCATCTAGGCCTCTTGCTCAGCTATCTTCTTGAGATTCCTATTTGCTGCTTTCCTGGTTTGAATCACTCCCTCCTGGATCCTCTTTCTCTTCCTTTGCTCTTTTGCTTTGCTCGTACACATTCACAAATAATTCCTTAGAAATAGTGTGTAGGAGTCAAGCTTTTTGAAACCTTACTTGTCTGAGAATGTCTTTATTGAGTAGATGGCACCGATTTCGTTTAGGCCTACAGACTGAATTACTGTTCCTAGCGCTTTTCATTTATTCTGTGCCTGGTATTTGGCCCATGAGCCTCTGAAGTTTTCATCTAACTAATTCACTTCTTTTTGTTTTCCAGACATTATTTTAAATTCTCTACTCCACCTTTAGTCAGTCTTCACCCCTGTTTATTGTTTCTTTCGTTCCATATTTGTGGGTTTTTCATTTGTGAGGAGGTGAGAAAAAGAATGGGAATCGAAAGCATTGGCTTATTTTTTCCTCTTTTGTTTTTGTTTGTTTTAGAGACAGGGTCTTACTCTGTTACCCAGTCTGGAGTGCAGTGAATGATCATAGTTCACTGCGGCCTCGACCTCCTGGGCTCAAGCAATCCTCCTGCCTCATCATCTTAAGTAGCTAGGACTACAGGCATGTGCCACCATCCCCAGCTAATTTTTGTATTTTTTTTGTAGTGAGACAAGGTCTCACTATGTTGCCCAGACTGATCTCGATCTCCCAGCCTCAGGCAGTTCTCCCCACTCACCTACCCATGTTGCTGGAATTACAGGAATGAGCCACTGCACCTGGCATTTTTTCCTCTTTATCTTGAACTGAGAATTTAAGAATGGGTATTTTACTTTAGATTAATATTTGATAAGTATAGGGTTTTTCTCTCTATTAAAAGCAAGATTTTAACCTAAGATACCAAAAGTGTTAGAAGCCTCTATAGTTCAGTGAACAAAGAGAAAAATTGAGTTTTACTGTATTGTACAGTATGTTAAATATTTTTATTTGCAGCATTTTTAGTTTGGTAAAATATTATTTGCCCTTCTAATTTCATACAAACTAGAGGACCATATTTAAGAATTTAACTGTATTCCTGGTAATGCTTCAGCAAGAGTAATTTCTTTTCAGCCTTAGAAAAATTTAAGTTACTGTTCAGTCTTTAAGAAAGAAAAAAACAAAATTTTTTAAAATGCAAACTCTGTTCTGTTTTCTCCCTTACTGTGTGTGCTGCTGTTGCTTCACACCAG
Seq C2 exon
CCCGAAGCAGTCGTATTCCTCGACCAAGTGTGAGTCAAGGATGCAGCCGGGAAGCTAGTCGGGAGAGCAGCAGAGACACAAGTCCTGTTCGCTCTTTTCAGCCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-CLASP2:NM_015097:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)