GgaINT1031009 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:45292104-45293351:-
Coord C1 exon
chr2:45293181-45293351
Coord A exon
chr2:45292212-45293180
Coord C2 exon
chr2:45292104-45292211
Length
969 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGTACCCTGAATCATACTAGCAC
3' ss Score
2.95
Exon sequences
Seq C1 exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
Seq A exon
GTAAGAACTGATAAAGAAGTCTTGATTTCTTTATAGACATTTTTATGTTGTGTGCTGGCTAACTATTCCTTGCATTTAAATTACAGGTGGATGGTAAGGTTAGAATGCATATAGATAGAAATCTAAAATGTACCTGGATGCTGAGACTAGGAACTGATAAACTAGGCACATTTTTTAACTTGAAGCAGATAGCTTCTTCCTCTGAAAATGCAGTAGTTGTTCTTTTCTTCTCCATTTCTTTCTTCCCTCTTTCAGTCTTGTCTTATTCTCATCCTCCAAACTACCACATCCATTAGATGAAAGTGCTACCATTTTAAGAAGATTTTCTTTATTACGTCTGTGTCCTCTGGATGTGTGTGTGTATATATATTTCTGTGACACAAAAATGAATGTCATGCTTCCCATGCCTCACAGTATAAGCTGATTACACCTTATTATCTGTAGTGAAATCAAGCAGTGTTCTTCAATAGATGCAACACCAATTTACAAGAACAGCAACTGCAGTTCTTCATCTTCTTTATTATGTATTTTTGAATTGTGCCCTGGCAGTGTGATCTTTATCTTTTCCTTCTTGAGAAAGCTTAATTTTTCATTTTTGTTACTGTTGTGTAGATTACCTAGAACGTGAGCACAAATTTTGAATGAATATTCTCTCCATATTTTTTTATTGCTTGCTCACTCTCCATCCTTTTCGAGAGCTTTTTTCAACCATTCTGTGAAGAGTTGGTAAATCAACTTTGTTAGCTGTCCAAAAAAGTAGTTTCGCTGAACTGACTACACTGTGTATTCTAGCACAATCAAGAAAGTGTGTGGAATCAGTTAAAACTTAAAATACAACATAATCATCAGTGTCTTTTCGTAGAAATACATCTTTGATCTTACTGAAAAACAGAATATCATTAAAACTGCAACTTTTCTTATGTCTTCTCCCTCTGTGCTGCTGTTTGTCTGTACCCTGAATCATACTAG
Seq C2 exon
CACGAGGCAGCCGCATTCCTCGGCCTAGTGTGAGTCAGGGGTGCAGTCGGGAGGCCAGCCGTGAAAGTAGCAGGGACACGAGCCCTGTCCGCTCTTTTCCACCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTAGATCTGGATCTCCT
R:
CAAGGGGTGGAAAAGAGCGG
Band lengths:
278-1247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]