BtaINT0038882 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7863552-7864274:-
Coord C1 exon
chr22:7864104-7864274
Coord A exon
chr22:7863660-7864103
Coord C2 exon
chr22:7863552-7863659
Length
444 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGCCATTGCTTCATGCCAGCCC
3' ss Score
5.27
Exon sequences
Seq C1 exon
CTGGCAGCCGGTCTGGTTCTCCAGGCAGAGTTCTGACCACAACAGCCCTCTCCACTGTGAGCTCTGGTGTTCAGAGAGTCCTGGTTAATTCAGCCTCCACACAGAAGAGAAGCAAGATACCCCGAAGCCAGGGCTGTAGCAGAGAGGCCAGTCCATCTCGGCTCTCAGTGG
Seq A exon
GTAAGATCCTTGTGTGAAACTTGGGACCTTGTGTTTCTTTTGTACTTTAGGACTTGGTAGCATTGAAGACCTCATTTAGGTACTTCTAAGTTTGAGGAAAACAACTTCAAATTCAAGAAGAATTGAAATATAGGTTTAAAAATGAAATTAGATGTCTTATATTGGAAGTGGTATTTCTATTTTAAATCTGTTTTTTTCTTTGCAGCTGTTTAATTTTAGTAAAATACACTTTGCTCTTCTAATCACATATAAACTAGAAGAGTGTAATCAAGAATTTTTAATGGTATTCCTGGTAATGCTTCATCAAGAATCATTTCTTCTCATCCTTAGCAGAACTTGTTATTTATTAGCTTTATAAGAAAGAAAAGAATGAAACCAAAATATCAAAAATACAAACCCTTCTCCTGTTTACTCCACTTCTGTGCTGCCATTGCTTCATGCCAG
Seq C2 exon
CCCGAAGCAGTCGGATTCCTCGGCCAAGCGTGAGTCAAGGGTGCAGCCGGGAAGCCAGCCGGGAGAGCAGCAGGGATACGAGTCCTGTGCGCTCTTTCCAGCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333:ENSBTAT00000015071:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGCCGGTCTGGTTC
R:
CAAGGGGCTGGAAAGAGCG
Band lengths:
278-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]