GgaINT0099684 @ galGal3
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44734444-44741451:-
Coord C1 exon
chr2:44741281-44741451
Coord A exon
chr2:44734551-44741280
Coord C2 exon
chr2:44734444-44734550
Length
6730 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTTGTTGACGATTTAACAGGTA
3' ss Score
5.58
Exon sequences
Seq C1 exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
Seq A exon
GTAAGAACTGATAAAGAAGTCTTGATTTCTTTATAGACATTTTTATGTTGTGTGCTGGCTAACTATTCCTTGCATTTAAATTACAGGTGGATGGTAAGGTTAGAATGCATATAGATAGAAATCTAAAATGTACCTGGATGCTGAGACTAGGAACTGATAAACTAGGCACATTTTTTAACTTGAAGCAGATAGCTTCTTCCTCTGAAAATGCAGTAGTTGTTCTTTTCTTCTCCATTTCTTTCTTCCCTCTTTCAGTCTTGTCTTATTCTCATCCTCCAAACTACCACATCCATTAGATGAAAGTGCTACCATTTTAAGAAGATTTTCTTTATTACGTCTGTGTCCTCTGGATGTGTGTGTGTATATATATTTCTGTGACACAAAAATGAATGTCATGCTTCCCATGCCTCACAGTATAAGCTGATTACACCTTATTATCTGTAGTGAAATCAAGCAGTGTTCTTCAATAGATGCAACACCAATTTACAAGAACAGCAACTGCAGTTCTTCATCTTCTTTATTATGTATTTTTGAATTGTGCCCTGGCAGTGTGATCTTTATCTTTTCCTTCTTGAGAAAGCTTAATTTTTCATTTTTGTTACTGTTGTGTAGATTACCTAGAACGTGAGCACAAATTTTGAATGAATATTCTCTCCATATTTTTTTATTGCTTGCTCACTCTCCATCCTTTTCGAGAGCTTTTTTCAACCATTCTGTGAAGAGTTGGTAAATCAACTTTGTTAGCTGTCCAAAAAAGTAGTTTCGCTGAACTGACTACACTGTGTATTCTAGCACAATCAAGAAAGTGTGTGGAATCAGTTAAAACTTAAAATACAACATAATCATCAGTGTCTTTTCGTAGAAATACATCTTTGATCTTACTGAAAAACAGAATATCATTAAAACTGCAACTTTTCTTATGTCTTCTCCCTCTGTGCTGCTGTTTGTCTGTACCCTGAATCATACTAGCACGAGGCAGCCGCATTCCTCGGCCTAGTGTGAGTCAGGGGTGCAGTCGGGAGGCCAGCCGTGAAAGTAGCAGGGACACGAGCCCTGTCCGCTCTTTTCCACCCCTTGGTAAGTACTGAGAGCCCCTTGTTGTGCATGGCTGTCCTTGCCCTTCATTATTTGCACCTAACGAATCCATGCCTCCTCCATGTAGCTTGTAGCAGGCCACCGTTATTTTCCCTTCCTTGGCTCACTCACCATTTACTTGGATGGAAAATTGACCAGCGTGTGAATGGGTTGCACACTTCAAAAATACTTTGGTAGTATATTAGCCTTACCTTAAAATCTAGCAGCTTGGAAAGATGTGTGATCCATAGCACCTAGTTGTTTGTTGTTGTTTAAAGGGTGATTCTGCTTTTGGAGGGTTTTTTGAAATTACTTGTTTATCTTTGTTAGAGTATTCATTGCTTAGAAACAGTTAATCAATTTGAGCAACTAAAATGTAGCTCGACTGTCGTCCTGCACCTTTCCCTGCATCAGCTAGAATCTGTTACTACGTGAAATGAAGCAGATTTTGTTCTTAGCTATCCTGTCATCAGAGCACCCCGTGCCGTTAGAGGGAGTCATGCAGTGGTGCAGATAAGGGACCTCTGTGGAGGAGTAACTGTGTTCTAGGCTGCCTTCAGTTTGCTACAAATGAACAGGGCACGTCGTAGAGTCCTTATCCTAGTACGTGAACCAAAGTACAGTTCTGTAGTTTATTTTAATCAGAGTAGAAAAAATGATTATAGAGTAGAGAAGTAATTGAACTGTGTTTTTACATAGGACAGAAGTTGAAAAAGTTGAAAACATACACACATATAACATAACCGCTTTCAGTCCTAGAGTTGCTGTAAGTTTTGCTTTTGCTGAGTATTTCAGTTTGTTGTCCTGACACTTAGATGATTTTGTATATTTGTCAAGTCGGTTTGTGCTTCTGAAAAGTGAATAAAGAATTGGGAAGTTTGCTTGTAATTATTCTAACATGCTATGGATCAGGGAAGCTTCCTGTATCCTTGTCAAGGTTGCTACAAACTTGGTAGCAAATGTTGATGAAAGTATCTTACGTGCTAGATTTTTATTTTTTCAGCAGTACGAAACTCTCTCCATATGACTGTCTGAACAGTGTAATTTTGTAGTTTGCAGTTTAAGGTGATGTGATTTTAGCCATGAAATATAGAAAACCTCTGGTTTCTCTCTCAGATGAAGCACCTGACTGTACTCCTCATTAGCACTGGAAGTCTGTTACAGTCTGTTAAGGCAGTGTGCTTCCTGTCAGCCATGGTTTTTATTGGGGAAGTATGGATTAATTGAATGAAAGCTGTTTCAGTAACTAATGCTAATCTACCCAGATGCTGTTTAATTGGGAAATTCAATTAAAAGTAGACATTGTACAGGATCCAATAATAAGCTTGTCTCCCTTACTAAAACACAGCAGGTGGACTGTATTGTAGCATACACACATCTTTTCTTTTGAAAATGAGATCTTTCCGGTTCTTTTTGTGCTGCTTTTGCTGCTCTACACCTTGAATTTAATTACATGCATGTAAGATCTGATTTACATTTGATTTTTTTAATCAAATGCTGTTAATTTAAAAAAAAATCCGTGTTCAACTAATAAAATAGTAGTGGGCCAGATGCTACTTGAGATTTTATTTTTATAGATGGAGTTTAATTATTGTATTACATTTCAGAACAAATACCTGTACAAATACAATAGGTTGAATGACTGATAGCATGGAGAATGCAAAGTAGCAAGTATGGGAGTTAGAATTAAAAAACAAACAAACAAACCTGTATCTGAAATAAACCTGAAATCCTTCTACTTATAAATTTTAAATGTCATTCAGTATTTTGTTAGACCAGCTTTGTTTTATGGGATGTTAGGGATTTCTCTTAAAAATAGTAATAATAATAATGTTTTTCAAGGATAGAATTAGAAGACAAATCAGTCTGTCTCTATATCTGTAAATAGAAATAGTTAAACATGGGATTGGGGAAGGGAGGAAATGTTGTTTGTATTATCTCTTTTTCAGCAGAGGAAGTTTTGCTTACAAGTGCTAAACCATTCAGGATGTAAACTGATGCAGTTGTTTTATGGTTGCTTCTCTGTGTGAAGTGCTTCTGTAGCCTCGCACCTTAATGTAAGACCACAAAGGGAGAGATAACAGCCACTCTTGAGTAGCAAGAGATTGGTAGCTAGTATGGAAGGGCCAATTTTTCTCTTATATGCAGCTGATATTAAACAGGAAGCCAGTGTAATCTTCTGTACTGTAGTCAAGAAATATGTTGTTATTTTGAGTCCTTTTAAAATAGTTCTTATTTTGATTAATCTTACAAATAATTAAAATGAAGAAAGATAAGTAAATACAGTACTTCTGCTGTTTGAAGGGTACAAAAAATATTCTTGAAAATGCTTTTTGAAATGAGATACATCCAAAATAGTGCCTCCTTTCACCATCCTAGAAAAATTTCCAGCATAATTCAAATGTACATGGAGACAGGATCATCTTGAATTGTATGGCTTAAGTTTACCTTTAATTTTCAGGGCTTGTTGATGGAAAATAATGAAAAGATTTACTCCACTGTTGCGTGTAGTTCCAGCTATATCACTCTCAATGCATATGTTTTGACATATTCTGTTCTGTCTCCTTTTCCATACTGAGACGTGTGTTGTGAAGAACCAAGTATTCCATAAAGTATTATTTGCTTAATAAAGCTACCTAGCTAAACATTTTCATGCAGATTTCACATGGCATAAAATACTTTGCTGTACCTCTGCAAAAAGCAGAGAAAGGGGAAAAAACAGAGTTGTTTCTGGGGTCTTTACAGTGCTCAGGATCATTTTGGAGTTCACTCAGGTTAAATGATGTGTTCTTCCTCAGATGTGATTTGACCTATGTTGGAATTACTATATTGAAATCAGGCTCTTAGATTACATATGATAATCAGAGTAAACGATGATTCATTTAATTCGTGGTTTCTATTTTTACTGCTTTATGTATCTTGAAAGTGTAAAATATTTGCATTTTCAGTTCTTTATTAAATTATAGTATTATATCCAGGATGCAAGTCACTTTGGTTAGACTTCAAAGTTTTCAAAGCCAGTTTCAATTACATGATTGTAAAATTCTGCATTAAGTAAACTGAAGAAGGAAACTGACTTGTTAAAAAATATTAATGTTGCTTGATTTAAGAAAGAAAATACTAGCAATATGGTATAGGCCAACTGTTTTAGAATCTCTGAAAGACCTTTTTTTAACAGAAACATCAGAAAAAAAGAGGGTGCTCCTTTTTATTCAGAAGTCCTTAAGGATCTTTGCTTCCAACGTTCCGTAACTTCAAAGGATTTTCAGCAGCCACAGTAAATGCTCAATTTCAACCTGTCTCAATTTCACATTTTACTTTAAAGAAAACGATCATAGAATCATAGAATGGCCTGGGTTGAAAAGGACCACAGTGATCATCAAGTTTCACCCCAACTGCTATGTGCAGGGTCGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCCAGTGTGTCACCACCCTCTGGGTGAAAAACTTCCTTCTAATATCCAACCTAAACCTCCCCTGTCCCAGTTTAAAACCATTCCCCCTTGTCCTATCACTATCCACCCTCATAAACAACCGTTCCCATTCCTGTTTATACGCTCCCTTCAAGTACTGGAAGGCTGCAATGTGGTCTCCCCAGAACCTTCTCTTCTCCAAGCTAAACAAGCCCAGTTCCCTCAACCACTCCTCATAGGAGAGGTGCTCCAGCCCTCTGATCATCTTAGTGGCATCCCTCCTTTGGACCTGCTCCAAGAGCTCCACGTCCTTCCTGTACTGGGGGCCAGGAACAATAGAAATATGGAATGTTAATTACATTGACTTCCTTTATTTTTTTAATTAAAATTGAATAATTTTAACTTTCACTTGTAAAGTGGTGATTTTAAGTAAGGTTAGCTTATTTGTACGTGGGAAAGAGCTTAAGCTAATACCAGTTGTCAGCTGCTAACACAGTTTGTGCAGTAGTTACTTTCTTACAGATTGTTTGGTATGTGAGCTCTGGCTTTTGAACATGTAGAATCAAATTAACTGCAATGGGAAAAACAGTATTAGTGAACCTTTTCCAGTATTTTTGAGGATTCTGTTGTGTGTGTTTGTGTGTGTATGTACCTACGCTTTCTTTTTTCTTTGAACTTGAACATATTTGCTTTTAATCTGCTCTTAATCCTTTAAATTAAAAATAAAAAATCATGCATGAAATATCCAGTGTACATAAACCTCTCTGTTCTGCATAATCAAAAAACGTGTCTGAATTTTTATCCTTCTGTGTAGTATTCATTTTCTTGTGCTAAAGCTGTATCTTTTTGACAAATGTGCTTTTGTTCATCTAAGCAACTATTGCAGCTCTTTGATTCCATGGTAATAGATAGGGTTTGTATGATCCTGTTATTGCAGCTTCCAGACATCACTCCAGATCCACTGGTGCCCTCTACGCTCCTGATGCTTATGGGGCTACAGGTGAAGGATGAGTACACTTTGCTGTCATCTGTGCAGTCATCCTGGATTTTTTTTCCTTCACCCACCCACTTGGTTATCCTCATAGTTCAGTTGTAAAAAGCATTATTTACATTAATTTCCGTTCTGTGGTTTTAATAATCCTGATAGATGTGTTTGTGTTACTAGATTTTGTCTCCACCTTCATGCCCCAGTGATAATCTTTTCCTTCCCTAACAACAGTCACTTTATTTTTTCCTTGCAGAGGATTTTTTAGTTTTCCATTTTTTCAGTATTTGTAGCGCATTCCTTATGCATGTAGTTTTTTCATCAGTAGTCTCTATGACCTTCCTATTATTTTTGCTTTCCTTTGAAATGAAAACAAAAACCCAAAATGAAGATGTTAAACAAACAAACCAACCAAAAAAAAAACCAAACCAAAAGGGCACTACTGAGTTCTTTTAGTTGAAGTATTTCGTCTGTTGTTGTTTTTTTTTTCTTCTGTGATACTGGAATAGAATCTTCATATTCCTGTTGTTATTTCATTTGTACCTTTCACCGCACCACTAAAGATGTTGGGATGAAAACATCCATAAGTTAGCCCCTATGTGATTTATTAGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTTTAAAGTGAGTATAGTATTAATATTCTGTGTTACAGTTCTGACTGACATCTGCTTTGTTTTTTTTTCTTTTCATTTTTTTTGTTGACGATTTAACAG
Seq C2 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]