DreEX0022116 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66523887-66525833:-
Coord C1 exon
chr5:66525806-66525833
Coord A exon
chr5:66524552-66524604
Coord C2 exon
chr5:66523887-66524004
Length
53 bp
Sequences
Splice sites
3' ss Seq
TAATGATCTTTCTTCTGCAGCTC
3' ss Score
9.01
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCACAAAGACAGCAACATTATACTAAAT
Seq A exon
CTCAAAAAGGAGTGTGACCGTCTAAATGAACAACTGAAGGAGGCGAAAACAAG
Seq C2 exon
GGAAAGCAGTTTCAGAAGTGAATCTGAAAAGGAGAAAGCAGCACTTCAGCAGACACTACAGACGCAGAGCGGCTTGGTCTCAGAAAAGGACAAGGAATTAAACTCTCTGAGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722_MULTIEX1-3/10=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.583 C2=0.912
Domain overlap (PFAM):
C1:
PF121283=DUF3584=PU(3.0=50.0),PF041569=IncA=PU(2.8=40.0)
A:
PF121283=DUF3584=FE(10.3=100),PF041569=IncA=FE(11.9=100)
C2:
PF121283=DUF3584=FE(23.6=100),PF041569=IncA=FE(27.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAAGACAGCAACATTATACT
R:
TCTCAGAGAGTTTAATTCCTTGTCCT
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]