DreEX0022115 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66521815-66526900:-
Coord C1 exon
chr5:66526815-66526900
Coord A exon
chr5:66525806-66525926
Coord C2 exon
chr5:66521815-66521935
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTGTGTGTTTCAGTGA
3' ss Score
10.76
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTGGATGCTCTAAAGCAGCAGAACACTCAGTATGAGGAGAGTCTGAGTTCTGATGGTCAGAGGATCAGCAGCCTCAGTAAAGAGAT
Seq A exon
TGAGGATCTAAAACAAGCAGTCGCTGAAAAATCCCAAGCAGTAGATGATTTGAAGAATGAGAAGGAGAAGCTTGTGGTGGATCTTGCCAACAGCCACAAAGACAGCAACATTATACTAAAT
Seq C2 exon
TGAGGAGTTGAAACAAGCCGCTGTCGAGAAATCCCAGGCAGTGGACGATCTGAAAAATGAGAAGGAAAAGCTAACCATGGATCTCGCCAACAGCCTCAAAGACAGCAACATACTGCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722_MULTIEX1-2/10=1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.361 C2=0.537
Domain overlap (PFAM):
C1:
PF0205011=FliJ=FE(25.2=100)
A:
PF0205011=FliJ=FE(36.0=100)
C2:
PF121283=DUF3584=FE(24.2=100),PF041569=IncA=FE(28.0=100),PF138511=GAS=FE(35.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAAAGCAGCAGAACACTCAGT
R:
GCAGTATGTTGCTGTCTTTGAGG
Band lengths:
194-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]