RnoEX0021789 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38417548-38425489:+
Coord C1 exon
chr12:38417548-38417664
Coord A exon
chr12:38419657-38419763
Coord C2 exon
chr12:38425369-38425489
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCTTGGTCTTTAAGTTG
3' ss Score
7.95
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCTGCTCAGACTGCAGAAGACGCCATGCAGATCATGGAACAGATGACCAAAGAGAAAACAGAAACACTGGCCTCCTTGGAGGACACCAAGCAAACGAATGCAAAACTACAGAGCGAA
Seq A exon
TTGGACACACTTAAGGAAAACAACTTGAAAACTGTGGAAGAGCTGAACAAGTCAAAAGAACTTCTGAACGAAGAGAACCAAAAAATGGAAGAATTCAAGAAGGAAAT
Seq C2 exon
AGAAACCCTAAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTTTCAGCACTGCAGGAAGAGAACGTCAAACTTGCCGAGGAGCTGGGGAGGACGCGGGACGAAGTCACAAGTCATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'44-33,'44-32,46-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGACTGCAGAAGACGC
R:
TTTGATGACTTGTGACTTCGTCCC
Band lengths:
234-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]