GgaEX1015737 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5877906-5881808:-
Coord C1 exon
chr15:5881671-5881808
Coord A exon
chr15:5880293-5880399
Coord C2 exon
chr15:5877906-5878026
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAGTATTTTTCCTCTTTAAGTTG
3' ss Score
5.9
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCCGACAAAAGAGCAGAAGAAGTTTTACAGACCATGGAGAAGGTGACCAAAGAGAAGGATGCCATTCACCAAGAAAAGATTGAAACTTTGGCATCCTTGGAGAACTCGAGACAGACAAACGAGAAGCTGCAGAATGAA
Seq A exon
TTGGACATGCTTAAACAAAACAACTTGAAAAATGAAGAGGAACTCACTAAATCAAAGGAGCTTCTGAACCTGGAGAACAAGAAAGTGGAAGAGCTTAAAAAAGAATT
Seq C2 exon
CGAAGCGCTGAAGCTGGCAGCTGCTCAGAAGTCCCAGCAGCTTGCAGCTTTGCAAGAGGAGAACGTGAAACTTGCCGAGGAGCTGGGCAGAAGCAGGGACGAAGTCACAAGTCATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-'27-23,'27-21,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.674 C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACAAAAGAGCAGAAGAA
R:
GTGACTTCGTCCCTGCTTCTG
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]