MmuEX6020824 @ mm9
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:124053608-124061947:-
Coord C1 exon
chr5:124061831-124061947
Coord A exon
chr5:124059248-124059354
Coord C2 exon
chr5:124053608-124053728
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTTGGTCTTTAAGTTG
3' ss Score
8.01
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCTGCTCAGACTGCAGAAGACGCCATGCAGATCATGGAACAGATGACCAAAGAGAAAACAGAAACGCTGGCCTCCTTGGAGGACACCAAGCAAACAAATGCAAGACTACAGAATGAA
Seq A exon
TTGGACACACTTAAGGAAAACAACTTGAAAACTGTGGAAGAGCTGAACAAGTCAAAAGAACTGCTGAGTGTAGAGAACCAAAAAATGGAAGAATTCAAGAAAGAAAT
Seq C2 exon
AGAAACCCTAAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTTTCAGCACTGCAGGAAGAGAACGTCAAACTTGCCGAGGAGCTGGGGAGAACCCGGGACGAAGTCACAAGTCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'24-29,'24-27,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=0.884 C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGACTGCAGAAGACGC
R:
TTCTGGTGACTTGTGACTTCGT
Band lengths:
234-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: