Special

ENSMUSG00000049550 @ mm9

Biotype
protein_coding
Gene Symbol
Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:124027804-124134627:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
49.07
95.89
0
Alternative 5'ss
228
chr5:124080234-124080461
-
50.93
95.89
0
Exon Skipping
6
chr5:124031601-124031606
-
29.17
99.06
0
Exon Skipping
2268
chr5:124063077-124065344
-
10.43
99.36
0
Exon Skipping
117
chr5:124077303-124077419
-
86.3
94.47
0
Exon Skipping
198
chr5:124092428-124092625
-
95.7
88.64
0
Exon Skipping
21
chr5:124036343-124036363
-
2.44
48.04
0
Exon Skipping
33
chr5:124088965-124088997
-
15.13
98.82
0
Exon Skipping
105
chr5:124085183-124085287
-
28.27
95.83
0
Exon Skipping
125
chr5:124097850-124097974
-
99.12
100
0
Intron Retention
2595
chr5:124030134-124032728
-
10.77
62.24
0
Intron Retention
9324
chr5:124081179-124090502
-
8.64
69.21
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000130779 CLIP1 1-to-1
Human hg19 ENSG00000130779 CLIP1 1-to-1
Rat rn6 ENSRNOG00000001247 Clip1 1-to-1
Cow bosTau6 ENSBTAG00000016779 CLIP1 1-to-1
Chicken galGal4 ENSGALG00000004467 CLIP1 1-to-1
Chicken galGal3 ENSGALG00000004467 CLIP1_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000078722 clip1a 1-to-2
Zebrafish danRer10 ENSDARG00000079483 CLIP1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0020503 CLIP-190 2-to-1