MmuEX0011699 @ mm9
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:124080234-124090563:-
Coord C1 exon
chr5:124090503-124090563
Coord A exon
chr5:124088965-124088997
Coord C2 exon
chr5:124080234-124081178
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTTTACTGATAGCAA
3' ss Score
6.06
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAAGGTTGAGGACCTTCAGTTCCGAGTTGAAGAAGAATCAATTACCAAAGGCGATCTTGAG
Seq A exon
CAAAAGAGCCCGATTTCTGAAGATCCCGAGAAT
Seq C2 exon
GTGGCTACCGTCTCAGAAAAGTCCCGAATAATGGAACTAGAAAAGGACCTAGCATTGAGAGCACAGGAAGTAGCTGAGCTCCGAAGAAGGCTAGAGTCCAGTAAACCTCCTGGGGATGTGGATATGTCTCTCTCCCTTTTGCAAGAAATAAGTGCTTTGCAAGAAAAGCTAGAAGCCATCCATACTGACCACCAGGGCGAGATGACTTCTTTGAAGGAACACTTCGGAGCTCGAGAGGAGGCGTTTCAGAAGGAGATCAAGGCTCTGCACACGGCCACTGAGAAGCTTTCCAAAGAGAACGAGTCCCTGAGAAGCAAGCTCGACCACGCTAATAAGGAGAACTCCGATGTGATAGCTCTATGGAAGTCCAAACTGGAGACCGCCATAGCATCCCACCAGCAGGCAATGGAGGAGCTGAAGGTGTCCTTTAGCAAAGGCATTGGAACGGACTCCGCTGAATTTGCTGAGTTAAAGACACAGATAGAGAGACTGAGACTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=1.000 C2=0.395
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(12.9=100)
A:
PF041569=IncA=PD(1.9=27.3)
C2:
PF0017016=bZIP_1=WD(100=12.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAGGACCTTCAGTTCCG
R:
TGTGCTCTCAATGCTAGGTCCT
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: