BtaEX0009243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55300379-55310156:+
Coord C1 exon
chr17:55300379-55300439
Coord A exon
chr17:55301875-55301907
Coord C2 exon
chr17:55309212-55310156
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTTTACTGATAGCAA
3' ss Score
6.06
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAAGGTTGAGGACCTTCAGTTCCGGGTTGAAGAAGAATCGATTACTAAGGGCGATCTTGAG
Seq A exon
CAAAAGAGCCAGATTTCTGAAGATCCTGAGAAT
Seq C2 exon
GTGGCCACGGTGTCAGAAAAGTCCCGCATCATGGAACTCGAAAAAGACCTCGCATTGCGAGTGCAGGAGGTAGCTGAGCTGCGGAGGCGGCTGGAGTCCAATAAGCCAGCTGGGGATGTGGACATGTCACTGTCCCTCTTGCAAGAGATCAGCGCTTTGCAGGAGAAGTTAGAAGCCACCCATAGTGACCACCAGAAAGAAGTCGCTTCTCTGAAGGAGCATTTTGGAGCCCGGGAAGAAATGCATCAGAAGGAGTTAAAGGTTTTGCAGGCCGCCACAGAGAAGCTTTCCAAAGAGAATGAGTCCCTGAAAAGCAAGCTCGACCACGCCAACAAGGAGAATTCAGACGTGATCGCCCTGTGGAAGTCTAAGCTGGAGACAGCCATCGCGTCCCACCAGCAGGCCATGGAGGAGCTGAAGGTGTCCTTCAGCAAGGGGGTCGGCACCGAGACAGCCGAATTCGCCGAGTTAAAAACGCAGATAGAGAAAATGAGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=1.000 C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000022319fB1766
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAGGACCTTCAGTTCCG
R:
TGCGAGGTCTTTTTCGAGTTCC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development