GgaEX0006007 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5895660-5901067:-
Coord C1 exon
chr15:5901007-5901067
Coord A exon
chr15:5899866-5899898
Coord C2 exon
chr15:5895660-5895764
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGTTTTAATTTTACTAATAGCGA
3' ss Score
5.56
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAAGGTTGAAGATCTTCAGTTCCGAGTGGAAGAAGAATCCATTACCAAAGGAGACCTAGAG
Seq A exon
CGAAAGAGGCAGATTTCGGAAGATCCAGAAAAT
Seq C2 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-4/21=3-5
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=1.000 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGTGGAAGAAGAATCCA
R:
TGGAGTTTGTCAGCTTTGGTCT
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event