GgaEX0006007 @ galGal4
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5835646-5844908:-
Coord C1 exon
chr15:5844848-5844908
Coord A exon
chr15:5843707-5843739
Coord C2 exon
chr15:5835646-5836572
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGTTTTAATTTTACTAATAGCGA
3' ss Score
5.56
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAAGGTTGAAGATCTTCAGTTCCGAGTGGAAGAAGAATCCATTACCAAAGGAGACCTAGAG
Seq A exon
CGAAAGAGGCAGATTTCGGAAGATCCAGAAAAT
Seq C2 exon
GTGGCTACAGTATCAGAAAAATCTCGCATCATGGAACTAGAAAGAGATCTAGCATTGCGGGTGAAGGAAGTAGCTGAGCTTCGAGGGAGATTAGAGTCTAGTAAACACATTGATGATGTGGATACTTCTCTTTCATTGTTACAAGAAATAAGTTCTTTGCAAGAAAAAATGGCAGCAGCTGGCAAAGAGCATCAGCGAGAGATGAGCTCTCTGAAAGAGAAGTTTGAAAGCAGTGAAGAAGCGCTGCGGAAAGAGATCAAAACACTTTCAGCTTCAAATGAGAGAATGGGAAAAGAAAACGAATCATTGAAAACTAAGCTTGATCATGCCAACAAAGAGAATTCAGACGTAATAGAGCTGTGGAAATCGAAGCTGGAATCTGCAATTGCTTCCCATCAGCAAGCAATGGAAGAACTGAAAGTTTCTTTCAACAAAGGTGTAGGGGCTCAGACAGCAGAATTTGCAGAGTTAAAAACTCAGATGGAGAAGGTTAAATTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-6/7=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=1.000 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007113fB647
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGTGGAAGAAGAATCCA
R:
TACTTCCTTCACCCGCAATGC
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]