Special

ENSMUSG00000049550 @ mm10

Biotype
protein_coding
Gene Symbol
Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123577795-123684618:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
50.12
100
0
Alternative 5'ss
228
chr5:123630225-123630452
-
49.88
100
0
Exon Skipping
6
chr5:123581592-123581597
-
27.07
99.07
0
Exon Skipping
2268
chr5:123613068-123615335
-
11.39
95.7
0
Exon Skipping
117
chr5:123627294-123627410
-
85.65
94.47
0
Exon Skipping
198
chr5:123642419-123642616
-
97.04
80.9
0
Exon Skipping
21
chr5:123586334-123586354
-
2.43
48.04
0
Exon Skipping
33
chr5:123638956-123638988
-
13.03
98.82
0
Exon Skipping
105
chr5:123635174-123635278
-
28.18
100
0
Exon Skipping
276
chr5:123578224-123578499
-
12.52
64.91
0
Exon Skipping
125
chr5:123647841-123647965
-
99.17
100
0
Intron Retention
2595
chr5:123580125-123582719
-
10.94
62.24
0
Intron Retention
9324
chr5:123631170-123640493
-
8.77
69.21
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000130779 CLIP1 1-to-1
Human hg19 ENSG00000130779 CLIP1 1-to-1
Rat rn6 ENSRNOG00000001247 Clip1 1-to-1
Cow bosTau6 ENSBTAG00000016779 CLIP1 1-to-1
Chicken galGal4 ENSGALG00000004467 CLIP1 1-to-1
Chicken galGal3 ENSGALG00000004467 CLIP1_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000078722 clip1a 1-to-1
Fruitfly dm6 FBgn0020503 CLIP-190 2-to-1