MmuEX0011694 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123611822-123617551:-
Coord C1 exon
chr5:123617336-123617551
Coord A exon
chr5:123613068-123615335
Coord C2 exon
chr5:123611822-123611938
Length
2268 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTTTGTCCCTGTAGTCG
3' ss Score
8.92
5' ss Seq
ACGGTAAAG
5' ss Score
7
Exon sequences
Seq C1 exon
GAAAAGAAGATGGAAACAAGCTACAACCAGTGTCAGGACCTGAAAGCTAAGTATGAAAAAGCCAGTTCTGAGACTAAAACAAAGCATGAAGAAATCCTGCAGAACCTCCAGAAGATGCTGGCGGACACAGAGGATAAGCTGAAGGCTGCTCAGGAGGCGAACAGAGATCTGATGCAGGACATGGAGGAGCTGAAAACACAGGCCGACAAAGCCAAA
Seq A exon
TCGCTAACTTATTTGTTAACATCAGCCAAAAAAGAGATTGAAGTGATGTCAGAAGAGCTGAGGGGTCTGAAATCAGAGAAGCAGCTCTATGCCCAGGAGGCAAATGCTTTAAAGTTAGAGAAAGGTTCTCTTTTATCAAAGCTGATAGAAGTGGAGACCAAGATCACTTTGCTTCAGGAAGACCAGCAGAAACTCTGGTCGGTAAACGAAACCCTCCACTTAGAAAAGGAGAGAGTCTCGGAAGAGAAGCAGGTCGCCGAGAAACGCTATCAGCAGGAGCACCGGGACAGGGAGTCCCTAGTGGCCGAGAGAGAGAAACTACTTAAGGAGATCAACGCTGCCCAGGAAGAACTCCTGAAGATGCACATGGAGAACGACTCCCTGGAAGCCTCCAAGGTGAGCATGCAGGTGCTCATCGAGGAGCTCCGCTTCTGCAAGGACAAGCTGATGGCCATGTCGGAGAAGGCGCGCGCCGAGAAAGAGCACCTGGAGGGCCAGGTCAAGAAGCTCACCGCCGAGAACTTGGTCCTGGTCAAAGACAAGGATGACGTCATCCAGAAGCTGCAGAGCGCCTACGAGGAGCTCGTCAAGGACCAGAAGGCTCTGGTGCAAGAGATCGAGGACCTCACGACTGAGAAGAAGTCAGCTGCGGAGAAGCAGATGAGCCTGGACAACACCTGCCTCACCCTGAAGGCCGAGCGGGAGAACCTTCTCCAGACCAACCGAGACCTGCAGTTTGAGAAGGACACGCTGCGCCAGGGCCAGGAGAAGCTGAGCGCCAGCCTGGAGGCCACCCTGCAGGTCAAACAGCTGCTCAGCACGGAGGCGGAGACCCTGCGCACGCAGCTGGACTGTGCCAGCAAAGCGCTGAGGAAGGCGGAGCTGGATATGAGACAGCTCCAGACCTCGAACTCCAGCCTCACCAAACTCCTGGAAGAGATTAAGACCTGCCGCGCCATCACGGACTCCGAGTGTATCCAGCTCCTCCACGAGAAGGAGAGCTTGGCGGCCTCCGAGCGGACGCTCCTGGCAGAGAAGGAGGAGCTGCTCAGCGAGAATAGAATCATCACCGAGAAACTCAGCAAACAATCAGAAGAGGTGGCCCGGCTCGAGATGGGCCTGAACGAGAAGATCACGTACTTAACCTCCGAGAAGGAGGTGGCCTGCCAGAAAGTCGCCAAGCTGAAAAAGCAGCAGGATAGTCTCCTGAAGGAGAAGTCGGCCCTGGAGCTGCAGAACGGAGATCTGCTCGCTGACAGGGAAAGTTCTATCAAGACCATAGGGGATCTGAGAAGGAAGTATGACCAAGAGGCTACAAACAGGCGGATTGTTATGCAGGAGAAGATGAAGCTGCTCGGTAACATCGATGCCCTCAAGAAGGAGCTGCAGGAAAGAAAGAAGGAGAACCAGGAGCTGACGAGCAGCAAGTGCGACCTCTCCTTGTTGCTGAAAGAGGCTCAGGACGCCAAAAAGAATCTCGAAAAAGAGCACACTAGCATGATACAGGCGAAGGATAACTTGAACGCTGAGCTGAAGACCTGTTGCTGCGAGAAGAACATGTTGCTGAGGGATGGCCTGAACCTGCAGGAAGAGTGTCAGAAGCTAAACGAGGAGATTCGGGAAATCCAGCAGACGTTAATCCTGGAGAAGGAGGCCAGGGCCAAGGAGAGCGAGACCTCTTTGTACGAGAACAACAAGCTCCATGGGAGAGTAGTGCTCCTGGAGGAAGAGATACAGAGGCTGAGGGTGTGCAGCGAGCAGCTCCAAACTGAGAATTTCACACTTACCCAAGAGAAGACCAACTCAGAGCAGAAGGTGGAGGAGATCATTAAGGAAAAGGAGCTCCTGAGTGCAGAGACGGCTCAGCTCGCGGCCAACATCGAGACCCTCAAAAGCGACTTCGCTGCCCTTTCCAAGTCCAAGTTGGAACTGCAAGAACTACACAGCTGCCTCACCAAGATACTGGATGACCTGCGGCTGAACCACGAGGTGGCCTTGACAGAGAGGGCCGAGGTGCTCCAGGACAACAAGAACCTCCTGGCTGAGAAACGGGAGATGATGCTGAGAAACGAAGAGGCGCTGAAGGAGAAGGAGAAGCTGGAAGAGAGCTACTTCATCCTTCAGAAAGAGATTAGCCAGCTGGCCCAGACCAACAGCCACATCTCAGCCAACCTCCTAGAGTCCCAAAGCGAGAACCGGACTCTGAGGAAAGACAAGAGCAAGCTTACCCTTAAAATTAGAGAGCTTGAGACCCTTCATTCGTTCACG
Seq C2 exon
GCTGCTCAGACTGCAGAAGACGCCATGCAGATCATGGAACAGATGACCAAAGAGAAAACAGAAACGCTGGCCTCCTTGGAGGACACCAAGCAAACAAATGCAAGACTACAGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550_MULTIEX3-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.875 A=0.129 C2=0.993
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types