BtaEX0009245 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55319013-55325184:+
Coord C1 exon
chr17:55319013-55319228
Coord A exon
chr17:55321724-55323991
Coord C2 exon
chr17:55325068-55325184
Length
2268 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTTTGTCTCTGTAGTCG
3' ss Score
8.53
5' ss Seq
ACGGTAAAG
5' ss Score
7
Exon sequences
Seq C1 exon
GAAAAGAAGATGGAAATGAGCTGGAACGAGTGTCAAGATCTGAAAGCCAGGTACGAGGAAGCCAGTTCCGAGAGCAGAGCCAAGCACGAAGAAGTCCTGCAGAACCTCCACAAGCTGCTACGGGACACAGAGGAGCGGCTGAAGGCAGCACAGGAGGAGAACCGCGAGCTGCTGCAGAAGCTGGAGGAGCTGGGGAAGCAAGCCGACAGAGCCAGA
Seq A exon
TCGCTAACTTACTTATTAACATCAGCCAAAAGAGAAATTGAACTAATGTCAGAAGAGCTGAGGGGTCTGAAATCAGAGAAGCAGCTTCTTGCCCAGGAGGGGAATGCTTTAAAGTTAGAAAAAGGTTCACTTCTGTCCAAACTTGTAGAGTTGGAGGCCAAAATAACTTTACTTCAGGAGGACCAACAGAAGCTCTGGTCAGTAAATGAAACCCTTAATTTAGAAAAGGAGAAAGTCTGGGAAGAAAAGCAAGACGCTGAAAAGCTTTATCAGCAAGAACAACTCGATAGAGCAGCTTTGGCTGTGGAGAGAGAGAAATTACTAAAAGAGATCAACATCGCGCAGGAGGAACTCTTGAAGATAAATACGGAAAACGAGTCTTTGCAGGCTTCTGAAGCAAGCTTGCAGGCACTCGCAGAGGAACTGCAGTTCAGCAAAGATATTCTAATGGCCGAGTCTCAGAAGTATCGGGAAGAAAAAGATCACCTGGAGAATCGTATCAAGAAGCTGGTCACTGAAAACCTCGCGTTGGCTAAAGATAAAGATGAAATTATTCAGAAGCTTCAGAGCTCCTATGAGGAGCTGGTCAAAGATCAGAAGAGCTTGGTGCAGGAGATCGAGGATCTCACAATAGAGAAAAAGTCAACTTTGGAGAAACAATCAGGTCTTGACAACATGTGTATAGCCCTAAAGGTCGAAAGAGATCGTCTTCTTCAGAGCAGCAAAGACCTGCAGTTCGAGAAGGACATGCTGCTTCAAGATCAGGAAAAGCTGAACACCAGTCTGGAGACTGCCCTTCAGGTCAAACATCTGCTCAGCACGGAAGCCGGTGAGCTCCGCACACAGCTGGAGGAGGCCAGCAAGGCACTGAGGAAGGCTGAGCTGGAGATTCTGCAACTGCAGGCCACGAACACAAGCCTCACAAACCTGCTGGAAGAAATTAAGACCAGCCGGGAGATCACAGACTCCGAGTGCATCCAGCTTCTGCACGAAAAAGAGACCTTAACCTCTTCTGAGAGAAGGCTCTTGGCCGAGAAAGAAGAACTGCTAAATGAAAATAGGCTCATCACTGAAAAACTCAGCAAATACTCGGAAGAGTCCGCCCACATCGAGATGAACCTGAATGAGAAGATCACATACCTCACTTCTGAGAAGGAGCTGGTTTGTCAGAAAATCACTAAGCTCAAAAAGCAGCAGGATAACCTCTTGAAAGAAAAATCGGTACTGGAGATGCGGAATGGGGATTTACTGGTAGAAAGAGAGAACTCCATGAAGGCCATGGAAGACCTTAAAAAGAAATATGATCAAGAGTCAGCCAACAGAAGAATCGTTGTGCACGAGAAGATGAAACTGCTCAGCAATCTCGATGCTCTGAAGAAAGAGCTTCAAGAGAGAGAAAAGGAAAACCAAGAGCTCACAGCCACCAAGTGTGATCTCTCTCTGATGCTAAAAGAGGCCCAAAACGCCAAAAAGATGCTAGAAAAAGAACACACTGACGTATTGCAAGCCAAGGAGAGTTTAAATGCTGAACTCAAGGCCTGCTGTTCTGAAAAGAACATCTTGTTAAGGGACGGGTTGAATCTGCAAGAAGAATGTCAGAAGTTAAACGAGAAGATTCACACAATGCAACAGTCCCTCGTGCTGGAGAAAGAAGCCAGGACGCAGGACAAAGAGTCGTCCTTGTACGAGAGCAACAAACTCCATGGGAAGGTGGCGCTCCTGGAACAGGAGGTGGAGAAGCTGAGAACCTGCACCCAGGAGCTCCAGTCTGAAAACTACACGCTTGTCCAAGATAAGACCAACTCAGAGCAGAAAGTGGCTGACATCATCAAGGAGAAGGAACTCCTGAGTGCAGAGACGGCGCGTTTGGCCACCAACATAGAGACTCTGAAGAGTGACTTTGCTGCCTTGTCCAAGTCCAAGTTGGAACTGCAGGAACTGCATGGCTACCTCACCAAGATGCTGGACGACCTGCAGCTGAACCACGAGGTGACCCTGGCTGAGCAGGCCAAGGCGACGCAGGACAACAGGAACCTCCTGGCCGAGAAAAGAGAGATGATGCTGAAAAAGGACGAGCTCCTGAAGGAGAAGGAGAAGCTGGCCGAAAGCTACTTCCTCCTCCAGAAAGAGATCAGCCAGCTGGCCAAAACCAACAGCCACATCTCAGCCAACCTCCTGGAGTCTCAAAACGAAAACCGTATTTTGAGGAAAGACAAGAGCAAGCTCGCTCTAAAAATCAGAGAGCTCGAGACCCTGCAGTCCTTTACG
Seq C2 exon
GCTGCTCAAACCGCTGAAGATGCCATGCAGATAATGGAACAGATGACCAAAGAGAAGACTGAAACACTGGCCTCCTTGGAAGATTCCAAGCAAACAAATGAAAAACTGCAGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.098 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000022319fB1767
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development