GgaEX1015747 @ galGal4
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5825512-5830321:-
Coord C1 exon
chr15:5830106-5830321
Coord A exon
chr15:5826801-5829080
Coord C2 exon
chr15:5825512-5825649
Length
2280 bp
Sequences
Splice sites
3' ss Seq
CCCCAACTTTATTTCTTTAGTCC
3' ss Score
5.78
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAAAAGCAAATGGAGACCAGTCAAAATCAGTATAAGGATCTTCAGGCAAAGTATGAAAAAGAAACTTCTGAGATGATCACCAAACATGATGCAGATATCAAAGGGTTTAAGCAGAACTTGTTGGATGCAGAAGAGGCACTGAAAGCTGCACAAAAGAAAAATGATGAGTTGGAAACACAGGCTGAGGAGCTGAAAAAGCAAGCAGAGCAGGCTAAA
Seq A exon
TCCTTAAGCTCTGTGTTAGCATCAGCCAGAAAAGAGATTGAACTAATGTCAGACAAGATGAGGGATTTAATATCAGAAAAAGAGACTCTGGCACAGGAGAGGAATACTCTAAAATTAGAGAAAGAGTCATTGTTATCACAGCATCTAGAGATGGAGTCAAAGATTTTGTTAGTTCAGCAAGACCGAGAAGAGCTTTGGACAAAAAATGAAGAACTTAATTCAGAGAATAAAAAAATTCTAAAGCAGAAAGAAGCAGCTGAGGCCAAAAGTCGTCAGGAGAGCACAGAAAAGGTAGCACTGATTTCTGAGAAAAGCAAATTGCTCTCTGAAATAGAGACAGCCCAGGCAGATCTTCTGAAGATAACTCAAGAAAATGATGCTCTCCGGTCTTCAGAGTCAACCTTGCTCCAACAGTTGAAAGAACTTCAGGCCAACAAAGATGCTGTGGATGTGGCATGTCAGAAACACATCAAGGAACGGGAAGAACTGGAGCATTATCAGAAGCTTTTGGAAGAGAATGATAGAGTCATTAAAGACAAAGATGATGTCATTCAGAGACTGCAAAGTTCTTATGATGACTTGGCTAGAAATCAAAGAGAGCTACTACAAGAAGTGTCAATTCTGACTGCAGAGAGAGATTCAGCCCAAGAAAAAGACTTGGATCTTAAAAGTACACATATAGCCTTAAAAAATGAAATTGACTGTCTGCTGCAGACAAATCGAAGTCTGCAGTCTGAGAAGGAGATGCTCCTCAAAAGCAGAGAAGAGCTGTGTGTGAGTTTGGCCAATACTGCTAATGAAAACCAGGCATTAAAACTGAGAAAAGACGAGATGCAAACAGAACTAGAGACTGAGCGTGAGAAGCTTGAAAAGATGACAAAAGACAATATGGATTTGAAGGCTTCCCTTTCTAGTCTCTCTAATTTTCTTGAGGAAATGAAATCCTCAAGAGAGGCATCTAACTCTGAAAAAATTCATTTGCTTCAAGAGGCTCTTTTTGCATCAGAACAAAGGCTTTTGGCTGAAAGGGAGGAACTTGTAAATGAAAATAAGGCAGTTACTGAAAAGCTCACTAAGGCGACAGCAGATGCTGTGCTTGCTGAGACAGCCTTCACTGAGAAAATAAATGAATTGAACTTGGAAAAAGAATCCGTTTTTTCTAAGTCACTGCAATTTGAAAAGCACAATGAAGCTCTTCTGCGAGAGAAGGATGAGTTGGAGAGAAAATACTCTGAGCTTCTTGATGAGAAGAAGTCTCTTGAAAATGCATTTTCTGATATGAAGAGAGAACAGGAGCTGGACTTCTCAGCCAAGAGACTTCTGGTCCAAGAGAATACCACCCTCAAATATTCCATTGAAGCCCTGGAGGAAGAACTAAAGAAGAAGAATCTAGAAAATCAAGAGCTGATAGCCTGTAGAAGTGACCTTTCAGATCTTCTGAAGGAGGCCCAGGATGCCAGAAGAACATTAGAAAACGAACTGGCTGCTGTATCACATGCCAAGCAGGTCCTGTCATCTTCATTCAATACCTGTTCCTCTGATATAGAAATACTGAACAGAGAGAGGACTGAATTACAAGATAAATGCCAGAAATTAACTGGTGAGGTTGAGAATATGAAAGAAAACTTAACCGTAGAAAAGAAAGCTAGAGTATTGGATAAGGAATCCTTTTTGTTGGAACGTATGGAGCTACAAAACAACATTGGTTTCTTAGAGAAGGAGGTGGAAGAGATGAGAGAGAAAAATAAAGAATTCCTGACTGAGAAAGAGCTTCTGGTTCAGGAGAAAGAAAAATCTGAAACTAAACTGGAGGAAGTAATTAAAGAAAAAATGATTCTCTATAAAGAGACAGAGCAGCTGGCATCCAAAATTGAGCAGCTGAAGAGTGACTTTACTTCTCTGTCTGTATCAAAAGCAGAGCTTGAGGACGTGCACAGCTGTGTCTCCGTGATGCTAGATGAACTTCAGCACAAATATGAGGTGACGGAGAAGGAGAAAATGGAGTTAGTTCAGGAAAATGAAAGTCTGCATGCTGAGTGGAAGAGTCTGGTCATCATTAATGAAGAAATACTAAAAGAGAAGGAGAAATTGTCCAAGGAATACTACAAACTGCACGAGAAAGTAGTGGCACTTCTAGAGCAAACTGATGCAGACTTCTCATGCAGACTGCTGGTTTCTGAGGGAAAACATGAGCTGCTGCTGGAGGAGATGAGCAATCTGGCTTTGAAACTAAGAGAAATAGAGAGACTCCAGGCCCAAACATTTATGCAAAAATTTGAG
Seq C2 exon
GCCGACAAAAGAGCAGAAGAAGTTTTACAGACCATGGAGAAGGTGACCAAAGAGAAGGATGCCATTCACCAAGAAAAGATTGAAACTTTGGCATCCTTGGAGAACTCGAGACAGACAAACGAGAAGCTGCAGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.936 A=0.139 C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007113fB6233
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]