MmuEX0011694 @ mm9
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:124061831-124067560:-
Coord C1 exon
chr5:124067345-124067560
Coord A exon
chr5:124063077-124065344
Coord C2 exon
chr5:124061831-124061947
Length
2268 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTTTGTCCCTGTAGTCG
3' ss Score
8.92
5' ss Seq
ACGGTAAAG
5' ss Score
7
Exon sequences
Seq C1 exon
GAAAAGAAGATGGAAACAAGCTACAACCAGTGTCAGGACCTGAAAGCTAAGTATGAAAAAGCCAGTTCTGAGACTAAAACAAAGCATGAAGAAATCCTGCAGAACCTCCAGAAGATGCTGGCGGACACAGAGGATAAGCTGAAGGCTGCTCAGGAGGCGAACAGAGATCTGATGCAGGACATGGAGGAGCTGAAAACACAGGCCGACAAAGCCAAA
Seq A exon
TCGCTAACTTATTTGTTAACATCAGCCAAAAAAGAGATTGAAGTGATGTCAGAAGAGCTGAGGGGTCTGAAATCAGAGAAGCAGCTCTATGCCCAGGAGGCAAATGCTTTAAAGTTAGAGAAAGGTTCTCTTTTATCAAAGCTGATAGAAGTGGAGACCAAGATCACTTTGCTTCAGGAAGACCAGCAGAAACTCTGGTCGGTAAACGAAACCCTCCACTTAGAAAAGGAGAGAGTCTCGGAAGAGAAGCAGGTCGCCGAGAAACGCTATCAGCAGGAGCACCGGGACAGGGAGTCCCTAGTGGCCGAGAGAGAGAAACTACTTAAGGAGATCAACGCTGCCCAGGAAGAACTCCTGAAGATGCACATGGAGAACGACTCCCTGGAAGCCTCCAAGGTGAGCATGCAGGTGCTCATCGAGGAGCTCCGCTTCTGCAAGGACAAGCTGATGGCCATGTCGGAGAAGGCGCGCGCCGAGAAAGAGCACCTGGAGGGCCAGGTCAAGAAGCTCACCGCCGAGAACTTGGTCCTGGTCAAAGACAAGGATGACGTCATCCAGAAGCTGCAGAGCGCCTACGAGGAGCTCGTCAAGGACCAGAAGGCTCTGGTGCAAGAGATCGAGGACCTCACGACTGAGAAGAAGTCAGCTGCGGAGAAGCAGATGAGCCTGGACAACACCTGCCTCACCCTGAAGGCCGAGCGGGAGAACCTTCTCCAGACCAACCGAGACCTGCAGTTTGAGAAGGACACGCTGCGCCAGGGCCAGGAGAAGCTGAGCGCCAGCCTGGAGGCCACCCTGCAGGTCAAACAGCTGCTCAGCACGGAGGCGGAGACCCTGCGCACGCAGCTGGACTGTGCCAGCAAAGCGCTGAGGAAGGCGGAGCTGGATATGAGACAGCTCCAGACCTCGAACTCCAGCCTCACCAAACTCCTGGAAGAGATTAAGACCTGCCGCGCCATCACGGACTCCGAGTGTATCCAGCTCCTCCACGAGAAGGAGAGCTTGGCGGCCTCCGAGCGGACGCTCCTGGCAGAGAAGGAGGAGCTGCTCAGCGAGAATAGAATCATCACCGAGAAACTCAGCAAACAATCAGAAGAGGTGGCCCGGCTCGAGATGGGCCTGAACGAGAAGATCACGTACTTAACCTCCGAGAAGGAGGTGGCCTGCCAGAAAGTCGCCAAGCTGAAAAAGCAGCAGGATAGTCTCCTGAAGGAGAAGTCGGCCCTGGAGCTGCAGAACGGAGATCTGCTCGCTGACAGGGAAAGTTCTATCAAGACCATAGGGGATCTGAGAAGGAAGTATGACCAAGAGGCTACAAACAGGCGGATTGTTATGCAGGAGAAGATGAAGCTGCTCGGTAACATCGATGCCCTCAAGAAGGAGCTGCAGGAAAGAAAGAAGGAGAACCAGGAGCTGACGAGCAGCAAGTGCGACCTCTCCTTGTTGCTGAAAGAGGCTCAGGACGCCAAAAAGAATCTCGAAAAAGAGCACACTAGCATGATACAGGCGAAGGATAACTTGAACGCTGAGCTGAAGACCTGTTGCTGCGAGAAGAACATGTTGCTGAGGGATGGCCTGAACCTGCAGGAAGAGTGTCAGAAGCTAAACGAGGAGATTCGGGAAATCCAGCAGACGTTAATCCTGGAGAAGGAGGCCAGGGCCAAGGAGAGCGAGACCTCTTTGTACGAGAACAACAAGCTCCATGGGAGAGTAGTGCTCCTGGAGGAAGAGATACAGAGGCTGAGGGTGTGCAGCGAGCAGCTCCAAACTGAGAATTTCACACTTACCCAAGAGAAGACCAACTCAGAGCAGAAGGTGGAGGAGATCATTAAGGAAAAGGAGCTCCTGAGTGCAGAGACGGCTCAGCTCGCGGCCAACATCGAGACCCTCAAAAGCGACTTCGCTGCCCTTTCCAAGTCCAAGTTGGAACTGCAAGAACTACACAGCTGCCTCACCAAGATACTGGATGACCTGCGGCTGAACCACGAGGTGGCCTTGACAGAGAGGGCCGAGGTGCTCCAGGACAACAAGAACCTCCTGGCTGAGAAACGGGAGATGATGCTGAGAAACGAAGAGGCGCTGAAGGAGAAGGAGAAGCTGGAAGAGAGCTACTTCATCCTTCAGAAAGAGATTAGCCAGCTGGCCCAGACCAACAGCCACATCTCAGCCAACCTCCTAGAGTCCCAAAGCGAGAACCGGACTCTGAGGAAAGACAAGAGCAAGCTTACCCTTAAAATTAGAGAGCTTGAGACCCTTCATTCGTTCACG
Seq C2 exon
GCTGCTCAGACTGCAGAAGACGCCATGCAGATCATGGAACAGATGACCAAAGAGAAAACAGAAACGCTGGCCTCCTTGGAGGACACCAAGCAAACAAATGCAAGACTACAGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.885 A=0.129 C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types