MmuEX0011696 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123641778-123646305:-
Coord C1 exon
chr5:123646083-123646305
Coord A exon
chr5:123642419-123642616
Coord C2 exon
chr5:123641778-123641881
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCTGACTTTCCTTTGCAGTTG
3' ss Score
11.24
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTATTTTCAGTGTCAACCCAAATATGGATTGTTCGCTCCTGTCCACAAAGTGACAAAGATTGGCTTCCCGTCTACTACCCCAGCCAAAGCCAAAGCCGCCGCTGTGAGGCGAGTGATGGCCGCCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAACCCAGCCGGACAGGACTA
Seq A exon
TTGACTGAAACCTCCTCCCGCTACGCCCGCAAGATCTCGGGCACCACTGCCCTCCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAGCGGGACCTGGAGCGGGCCGAGGTGGCCAAGGCTACCAGCCACGTGGGGGAAATAGAGCAGGAGCTAGCCCTGGCCCGAGATGGGCATGACCAG
Seq C2 exon
CATGTCCTGGAACTAGAGGCCAAGATGGACCAGCTACGGACCATGGTGGAAGCTGCTGACAGGGAGAAAGTGGAGCTGCTCAACCAGCTGGAAGAGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.448 A=0.484 C2=0.473
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.0),PF041569=IncA=PU(18.7=38.7)
A:
PF041569=IncA=FE(41.9=100)
C2:
PF041569=IncA=FE(21.9=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTTCCCGTCTACTACCC
R:
CTGGTTGAGCAGCTCCACTTT
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types