DreEX0022113 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66551360-66558619:-
Coord C1 exon
chr5:66558391-66558619
Coord A exon
chr5:66556078-66556275
Coord C2 exon
chr5:66551360-66551463
Length
198 bp
Sequences
Splice sites
3' ss Seq
AAATGAGTTTCTCTCTGAAGCTG
3' ss Score
4.43
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
Exon sequences
Seq C1 exon
GTATTTCCAGTGTCAGCCCAAGTATGGTCTCTTTGCACCAGTGCACAAGGTGACCCGTATAGGTTTTCCCTCCACTACCCCAGCAAAGGCAAAAACCACTGTGCGGAAGACGACCGCCACCACCGCCGCCACTCCGTCAGCACTGAAGCGCAGCCCGAGTGCCTCCTCCATCAGCTCCATGAGCTCTGTAGCCTCTTCTGCTAGTTGCAAGCCAAGCCGTACAGGACTG
Seq A exon
CTGACAGAGACGTCCACGAGGTATTCGAGGAAGATCTCGGGAACTACAGCGCTTCAGGAGGCCTTGAAGGAGAAACAGCAGCACATCGAGCAGCTCCTGGCAGAGCGGGACCTGGAGAGAGCAGAGGTTGCCAAGGCAACAAACCATGTGGGCGAAGTGGAGCAGGAGCTTACATTACTGAGAGAAGGCCAGGAGCAG
Seq C2 exon
TATGCTTCAGAGGTCAATGACAAAATGGACCAGCTGCGAGCGCTGGTGGAGGCAGCAGACCGAGAGAAGGTGGAGCTGCTCAACCAGCTGGAGGAGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=0.636 C2=0.229
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=23.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTTCCCTCCACTACCCC
R:
GTTGAGCAGCTCCACCTTCTC
Band lengths:
253-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]