GgaEX0006012 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5903040-5905945:-
Coord C1 exon
chr15:5905729-5905945
Coord A exon
chr15:5903509-5903706
Coord C2 exon
chr15:5903040-5903143
Length
198 bp
Sequences
Splice sites
3' ss Seq
AATGTGCTTGCTTTGTGAAGTTG
3' ss Score
3.03
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
ATACTTTCAGTGTCAGCCAAGATACGGTTTGTTTGCTCCGGTCCACAAAGTTACAAAGATTGGATTCCCATCGACTACCCCGGCAAAAGCGAAGACAACTGTGCGAAAAGTGGTTGCGACTCCCGCAGCCCTGAAACGTAGCCCGAGTGCATCTTCCCTGAGCTCTCTCAGTTCTGTGGCATCTTCAGTAAGCAGCAAGCCGAGCCGTACAGGACTA
Seq A exon
TTGACAGAAACATCCTCCCGGTATGCAAGAAAGATTTCTGGTACCACAGCCCTGCAGGAGGCACTGAAGGAGAAACAGCAACATATTGAACAGCTCCTGGCAGAAAGGGACCTGGAGAGGGCAGAAGTTGCAAAAGCAACCAGTCACGTGGGGGAAATAGAGCAGGAATTAGCACTTGTTCGAGATGGACACGACCGG
Seq C2 exon
CATGTACTGGAGATGGAAGCAAAAATGGACCAGCTGCGAGCCATGGTGGAGGCTGCTGACAGGGAGAAAGTGGAGCTTCTCAATCAGCTCGAGGAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-1/21=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.375 C2=0.357
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGTCCACAAAGTTACA
R:
TCCACTTTCTCCCTGTCAGCA
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]