GgaEX0006012 @ galGal4
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5846881-5849786:-
Coord C1 exon
chr15:5849570-5849786
Coord A exon
chr15:5847350-5847547
Coord C2 exon
chr15:5846881-5846984
Length
198 bp
Sequences
Splice sites
3' ss Seq
AATGTGCTTGCTTTGTGAAGTTG
3' ss Score
3.03
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
ATACTTTCAGTGTCAGCCAAGATACGGTTTGTTTGCTCCGGTCCACAAAGTTACAAAGATTGGATTCCCATCGACTACCCCGGCAAAAGCGAAGACAACTGTGCGAAAAGTGGTTGCGACTCCCGCAGCCCTGAAACGTAGCCCGAGTGCATCTTCCCTGAGCTCTCTCAGTTCTGTGGCATCTTCAGTAAGCAGCAAGCCGAGCCGTACAGGACTA
Seq A exon
TTGACAGAAACATCCTCCCGGTATGCAAGAAAGATTTCTGGTACCACAGCCCTGCAGGAGGCACTGAAGGAGAAACAGCAACATATTGAACAGCTCCTGGCAGAAAGGGACCTGGAGAGGGCAGAAGTTGCAAAAGCAACCAGTCACGTGGGGGAAATAGAGCAGGAATTAGCACTTGTTCGAGATGGACACGACCGG
Seq C2 exon
CATGTACTGGAGATGGAAGCAAAAATGGACCAGCTGCGAGCCATGGTGGAGGCTGCTGACAGGGAGAAAGTGGAGCTTCTCAATCAGCTCGAGGAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.367 C2=0.349
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.7)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000007113fB6231
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGTCCACAAAGTTACA
R:
TCCACTTTCTCCCTGTCAGCA
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]