BtaEX0009241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55293292-55298376:+
Coord C1 exon
chr17:55293292-55293514
Coord A exon
chr17:55297220-55297417
Coord C2 exon
chr17:55298273-55298376
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTTTAACTTTCCTTTGCAGTTG
3' ss Score
10.97
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTATTTTCAGTGTCAACCCAAATATGGCCTGTTTGCTCCGGTCCACAAAGTCACCAAGATTGGCTTCCCCTCCACCACGCCAGCCAAAGCCAAGGCCGCTGCGGTGAGGCGAGTGATGGCGACCACGCCCGCCAGCATGAAGCGCAGCCCGTCCGCCTCCTCTCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAGCCCAGCCGGACAGGACTG
Seq A exon
TTGACCGAAACCTCCTCCCGTTACGCCAGGAAGATCTCCGGCACCACCGCCCTCCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCCGAACGGGATCTAGAGAGGGCGGAGGTGGCCAAGGCCACGAGCCACGTGGGGGAGATAGAGCAGGAGCTCGCCCTGGCCCGGGACGGACACGACCAG
Seq C2 exon
CACGTCCTGGAATTGGAGGCCAAGATGGACCAGCTGCGAACGATGGTGGAAGCTGCCGACAGGGAGAAGGTGGAACTTCTCAACCAACTTGAAGAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.579 C2=0.457
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATTGGCTTCCCCTCCAC
R:
AGTTCCACCTTCTCCCTGTCG
Band lengths:
246-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development