RnoEX0021796 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38385100-38389554:+
Coord C1 exon
chr12:38385100-38385322
Coord A exon
chr12:38388691-38388888
Coord C2 exon
chr12:38389451-38389554
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCTGACTTTCCTTTGCAGTTG
3' ss Score
11.24
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTATTTTCAATGTCAACCCAAGTACGGATTGTTCGCTCCCGTCCACAAAGTGACAAAGATTGGCTTCCCTTCTACCACCCCAGCCAAAGCCAAAGCCGCTGCTGTGAGGCGAGTGATGGCCACCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCTGTGGCCTCCTCTGTGAGCAGCAAGCCCAGCCGGACAGGACTA
Seq A exon
TTGACTGAAACCTCTTCCCGCTACGCCCGCAAGATCTCGGGCACCACTGCCCTCCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAGCGGGACCTGGAGCGGGCCGAGGTGGCCAAGGCTACCAGCCACGTGGGGGAAATAGAGCAGGAGCTAGCCCTGGCCCGAGATGGGCATGACCAG
Seq C2 exon
CATGTCCTGGAACTGGAGGCCAAGATGGACCAGCTGCGTACCATGGTAGAAGCTGCTGACAGGGAGAAAGTGGAGCTCCTCAACCAGCTGGAAGAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.527 C2=0.464
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAGTACGGATTGTTCGC
R:
GTACGCAGCTGGTCCATCTTG
Band lengths:
249-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]