HsaEX0015668 @ hg19
Exon Skipping
Gene
ENSG00000130779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461]
Coordinates
chr12:122839000-122845728:-
Coord C1 exon
chr12:122845506-122845728
Coord A exon
chr12:122839662-122839859
Coord C2 exon
chr12:122839000-122839103
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCTAACTTTCCTTTACAGTTG
3' ss Score
10.71
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTATTTTCAGTGTCAACCCAAATATGGCTTGTTCGCTCCTGTCCACAAAGTTACCAAGATTGGCTTCCCTTCCACTACACCAGCCAAAGCCAAGGCCAACGCAGTGAGGCGAGTGATGGCGACCACGTCCGCCAGCCTGAAGCGCAGCCCTTCTGCCTCTTCCCTCAGCTCCATGAGCTCAGTGGCCTCCTCTGTGAGCAGCAGGCCCAGTCGGACAGGACTA
Seq A exon
TTGACTGAAACCTCCTCCCGTTACGCCAGGAAGATCTCCGGTACCACTGCCCTCCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCGGAACGGGATCTGGAGAGGGCGGAGGTGGCCAAGGCCACGAGCCACGTGGGGGAGATAGAGCAGGAGCTAGCTCTGGCCCGGGACGGACATGACCAG
Seq C2 exon
CATGTCCTGGAATTGGAAGCCAAAATGGACCAGCTGCGAACAATGGTGGAAGCTGCTGACAGGGAGAAGGTGGAGCTTCTCAACCAGCTTGAAGAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.490 A=0.629 C2=0.429
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.0),PF058526=DUF848=PU(29.2=44.0)
A:
NO
C2:
PF058526=DUF848=FE(30.1=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGCTCCTGTCCACAAAGT
R:
CTGTCAGCAGCTTCCACCATT
Band lengths:
255-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)