MmuEX0011698 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123583521-123590845:-
Coord C1 exon
chr5:123590793-123590845
Coord A exon
chr5:123586334-123586354
Coord C2 exon
chr5:123583521-123583638
Length
21 bp
Sequences
Splice sites
3' ss Seq
TATTATCTTGCATTTTAAAGCTT
3' ss Score
7.07
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTGGAAGAAGAACGATCTGTACTCAATAATCAGTTGTTAGAAATGAAAAAGAG
Seq A exon
CTTGCCCAGTAACACTTTAAG
Seq C2 exon
AGAATCTGAGTTCAGAAAAGACGCCGATGAAGAGAAAGCCTCCTTGCAGAAGTCGATCAGCCTCACCAGTGCCTTGCTCACAGAGAAGGACGCGGAGCTGGAGAAGCTGAGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=1.000 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAGAACGATCTGTACTCA
R:
GTGAGGCTGATCGACTTCTGC
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types