GgaEX1015741 @ galGal4
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5813264-5818313:-
Coord C1 exon
chr15:5818261-5818313
Coord A exon
chr15:5816133-5816144
Coord C2 exon
chr15:5813264-5813381
Length
12 bp
Sequences
Splice sites
3' ss Seq
CATTTTTAAAGCTTGCCCAGTAA
3' ss Score
-3.31
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTGGAAGAGGAGAGATCAGTACTCAATAACCAGTTACTAGAGATGAAAAAGAG
Seq A exon
TAACACTTTAAG
Seq C2 exon
AGAATCAACATTAAAAAAAGAAATTGATGAAGAGAGAGCATCTTTACAAAAATCCATCAGTGATACTAGTGCCTTGATCACACAGAAAGATGAAGAACTGGAAAAACTCAGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=1.000 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007113fB6232
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGGAGAGATCAGTACTCA
R:
TGTAAAGATGCTCTCTCTTCATCA
Band lengths:
100-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]