RnoEX0021791 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38439528-38446693:+
Coord C1 exon
chr12:38439528-38439580
Coord A exon
chr12:38443902-38443922
Coord C2 exon
chr12:38446576-38446693
Length
21 bp
Sequences
Splice sites
3' ss Seq
TATTATCTTGCATTTTAAAGCTT
3' ss Score
7.07
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTGGAAGAAGAACGATCTGTACTCAATAATCAGTTGTTAGAAATGAAAAAGAG
Seq A exon
CTTACCCAGTAACACCTTAAG
Seq C2 exon
AGAATCCGAGTACAGAAAAGACGCCGATGAAGAGAAAGCCTCCTTGCAGAAATCCATCAGCCTCACCAGTGCCTTACTCACGGAGAAGGACGCAGAGCTGGAGAAGCTGAGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'50-38,'50-37,52-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=1.000 C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAGAACGATCTGTACTCA
R:
AGGCTGATGGATTTCTGCAAGG
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]