HsaEX1008983 @ hg38
Exon Skipping
Gene
ENSG00000130779 | CLIP1
Description
CAP-Gly domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr12:122279028-122288541:-
Coord C1 exon
chr12:122288489-122288541
Coord A exon
chr12:122282511-122282531
Coord C2 exon
chr12:122279028-122279145
Length
21 bp
Sequences
Splice sites
3' ss Seq
GTTATCTTGCATTTTTAAAGCTT
3' ss Score
6.19
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTGGAAGAAGAAAGATCTGTGCTCAATAATCAGTTGTTAGAAATGAAAAAAAG
Seq A exon
CTTGCCCAGTAACACTTTAAG
Seq C2 exon
AGAATCCAAGTTCATAAAAGACGCAGATGAAGAGAAAGCTTCCTTGCAGAAATCCATCAGTATAACTAGTGCCTTACTCACAGAAAAGGATGCCGAGCTGGAGAAACTGAGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.500 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000620786fB12499
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAGAAAGATCTGTGCTCA
R:
TGATGGATTTCTGCAAGGAAGCT
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains