MmuEX6020815 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123646083-123654020:-
Coord C1 exon
chr5:123653452-123654020
Coord A exon
chr5:123647841-123647965
Coord C2 exon
chr5:123646083-123646305
Length
125 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTTTTCCTCTTGTAGGTT
3' ss Score
13.12
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGGAGTTTGTGGATGACTTTCGAGTTGGAGAACGTGTTTGGGTGAACGGGAATAAGCCCGGATTTATCCAGTTTCTTGGGGAAACTCAGTTCGCACCAGGCCAGTGGGCTGGGATTGTTTTAGATGAACCCATAGGGAAGAACGATGGCTCTGTGGCGGGAGTGCGGTATTTCCAGTGTGAACCTTTAAAGGGCATATTCACCCGACCTTCAAAGCTAACGAGGAAGGTGCAGGCAGAAGATGAAGCCAACGGCCTGCAGGCAGCTCCTGGGAGAACTGCTTCACCTCTGTCCACTGCTGCAGCTACCATGGTGTCTTCTTCTCCAGCCACTCCCTCAAATATTCCCCACAAACCGTCCCAGTCAACGGCAAAAGAACCTTCGGCTACACCTCAAATTAGCAACCTCACAAAAACTGCCAGTGAGTCGATCTCCAACCTTTCAGAGGCTGGCTCTGTCAAGAAGGGGGAGCGGGAGCTCAAGGTCGGAGACAGGGTGCTG
Seq A exon
GTTGGTGGCACTAAGGCTGGCGTAGTCCGCTTTCTTGGCGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGTGTGGAGTTAGACGAGCCTTTGGGGAAGAACGATGGTGCTGTGGCCGGAACAAG
Seq C2 exon
GTATTTTCAGTGTCAACCCAAATATGGATTGTTCGCTCCTGTCCACAAAGTGACAAAGATTGGCTTCCCGTCTACTACCCCAGCCAAAGCCAAAGCCGCCGCTGTGAGGCGAGTGATGGCCGCCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAACCCAGCCGGACAGGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'24-15,'24-13,25-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=0.049 C2=0.448
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=34.7),PF0130220=CAP_GLY=PU(7.6=2.6)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=24.0),PF041569=IncA=PU(18.7=38.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCTTCTTCTCCAGCCA
R:
ACTTTGTGGACAGGAGCGAAC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types