RnoEX6064380 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38378856-38385322:+
Coord C1 exon
chr12:38378856-38379424
Coord A exon
chr12:38383542-38383666
Coord C2 exon
chr12:38385100-38385322
Length
125 bp
Sequences
Splice sites
3' ss Seq
CACCTTTACTCTTCTTCTAGGTC
3' ss Score
10.82
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGGAGTTTGTGGACGACTTCCGAGTTGGAGAACGTGTTTGGGTGAACGGGAATAAACCTGGATTTATCCAGTTTCTTGGGGAAACTCAGTTTGCACCAGGCCAGTGGGCTGGTATTGTTTTGGATGAACCCATAGGAAAGAACGACGGCTCAGTGGCAGGAGTGCGGTATTTCCAGTGTGAGCCTTTAAAGGGCATCTTCACCCGACCGTCAAAGCTAACGAGGAAGGTACAAGCAGAGGATGAAGCCAACGGCCTGCAGACAGCTCACGCGAGAGCTGCTTCACCTCTGTCCACTGCTGCAGCCACCATGGTGTCCTCTTCTCCAGCCACTCCCTCAAATATTCCCCAGAAACCGTCCCAGCCAGTGGCAAAAGAAACTTCAGCGACACCTCAAATTAGCAACCTTACGAAAACCGCCAGCGAGTCAATCTCCAACCTTTCAGAGGCTGGCTCTGTCAAGAAGGGAGAGCGAGAGCTCAAGATCGGAGACAGGGTGCTG
Seq A exon
GTCGGTGGCACGAAGGCTGGCGTGGTCCGGTTTCTTGGAGAGACTGACTTCGCCAAGGGGGAGTGGTGTGGTGTGGAATTGGACGAACCTTTGGGGAAGAACGACGGTGCTGTTGCTGGAACAAG
Seq C2 exon
GTATTTTCAATGTCAACCCAAGTACGGATTGTTCGCTCCCGTCCACAAAGTGACAAAGATTGGCTTCCCTTCTACCACCCCAGCCAAAGCCAAAGCCGCTGCTGTGAGGCGAGTGATGGCCACCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCTGTGGCCTCCTCTGTGAGCAGCAAGCCCAGCCGGACAGGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'14-8,'14-7,15-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=0.048 C2=0.378
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=34.7),PF0130220=CAP_GLY=PU(7.6=2.6)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=24.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCTCTGTCCACTGCTG
R:
GCGAACAATCCGTACTTGGGT
Band lengths:
257-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]