DreEX6014507 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66558391-66561342:-
Coord C1 exon
chr5:66560843-66561342
Coord A exon
chr5:66558808-66558932
Coord C2 exon
chr5:66558391-66558619
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTACACATCTATAATTATAGGTT
3' ss Score
5.34
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTGCTTCAAAAGCAGCTCAAAGTGACAAATCCTCAGCTGAAGCTCCAGATGCAGGAGAGCAGTTCAAGGTTGGGGATCGTGTCTGGGTAAACGGCAACAAACCTGGCGTAGTTCAGTTTTTAGGAGAGACGCAGTTTGCTCCGGGGCAGTGGGCTGGCATTGTGCTGGATGAGCCGATCGGGAAAAATGACGGCTCGGTGTCAGGCGTGCGTTATTTTCAGTGTGAAGCGTTAAGGGGTATTTTCACACGTCCTTCCAAGCTCTCAAGCACAGAAGGTGAAGCGGACGGTACGACAACAGCTCCTCCGTCCCGTGCTGCTTCACCCACCCCATCCACCACATCAGTGTCCGCTTCATCCAAGAAACCAGCATCACCCACTAAAGCTGCAGCACCAACCTCAGATCTGGTGCGGTCCAAAAGTGAGTCGGTGTCCAATCTGTCCGAGAGCGGTTCTGTCAAGAAAGGGGAACGGGAGCTGAAGATCAACGATCGAGTGCTG
Seq A exon
GTTGCTGGCTCAAAAGCTGGCGTGGTGCGTTTCTTAGGGGAAACTGATTTTGCCAAGGGTGAGTGGTGTGGAGTTGAGCTGGATGAGCCCTTGGGGAAGAACGATGGAGCTGTGGCTGGAACCAG
Seq C2 exon
GTATTTCCAGTGTCAGCCCAAGTATGGTCTCTTTGCACCAGTGCACAAGGTGACCCGTATAGGTTTTCCCTCCACTACCCCAGCAAAGGCAAAAACCACTGTGCGGAAGACGACCGCCACCACCGCCGCCACTCCGTCAGCACTGAAGCGCAGCCCGAGTGCCTCCTCCATCAGCTCCATGAGCTCTGTAGCCTCTTCTGCTAGTTGCAAGCCAAGCCGTACAGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.048 C2=0.597
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=39.5),PF0130220=CAP_GLY=PU(7.6=3.0)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=23.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCACCCACTAAAGCTGC
R:
CTTCCGCACAGTGGTTTTTGC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]