BtaEX6072472 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55280382-55293514:+
Coord C1 exon
chr17:55280382-55280953
Coord A exon
chr17:55291944-55292068
Coord C2 exon
chr17:55293292-55293514
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTACTATTCTCTGCTTCCAGGTT
3' ss Score
10.81
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGTTTGTGGATGACTTTCGAGTTGGGGAGCGAGTTTGGGTGAATGGGAATAAGCCTGGATTTATCCAGTTCCTGGGAGAAACACAGTTTGCACCAGGCCAGTGGGCCGGGATCGTTTTGGATGAGCCCATAGGCAAGAATGATGGCTCAGTAGCAGGAGTTCGGTACTTCCAGTGTGAGCTTCTAAAGGGGATATTTACCCGACCTTCAAAGTTGACGAGGAAGGTGCAGGCAGAGGATGAAGCTGATGGCCCGCAGACGCCTCACGCTTCCAGGGCGACTTCGTCTCTGTCCACTTCGGGAATCAGCATGGCGTCCTCGTCTCCAGCCACCCCCTCAAATATTCCCCACAAATCATCCCAACCAACCGCAAAGGAACCTTCAGCTACATCTCAGATCAGCAACCTTACGAAAACCGCCAGCGAATCTATCTCCAACCTTTCAGAGGCCGGCTCAATCAAGAAAGGAGAGAGAGAACTCAAAATCGGAGACCGAGTACTG
Seq A exon
GTTGGTGGCACGAAGGCCGGTGTAGTCCGGTTTCTTGGGGAGACAGACTTCGCCAAGGGGGAGTGGTGTGGCGTGGAGTTGGATGAGCCTCTTGGGAAGAACGACGGGGCTGTTGCTGGAACAAG
Seq C2 exon
GTATTTTCAGTGTCAACCCAAATATGGCCTGTTTGCTCCGGTCCACAAAGTCACCAAGATTGGCTTCCCCTCCACCACGCCAGCCAAAGCCAAGGCCGCTGCGGTGAGGCGAGTGATGGCGACCACGCCCGCCAGCATGAAGCGCAGCCCGTCCGCCTCCTCTCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAGCCCAGCCGGACAGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779-'10-4,'10-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=0.048 C2=0.560
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=34.6),PF0130220=CAP_GLY=PU(7.6=2.6)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=24.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCACTTCGGGAATCAGC
R:
CCGGAGCAAACAGGCCATATT
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]