GgaEX1015742 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5905729-5917746:-
Coord C1 exon
chr15:5917175-5917746
Coord A exon
chr15:5906991-5907115
Coord C2 exon
chr15:5905729-5905945
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCCTTATTGTTTCAGGTG
3' ss Score
11.49
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TGGATGATTTCAGAGTTGGGGAGCGTGTTTGGGTCAACGGAAATAAACCTGGCTTTATTCAGTTCCTTGGTGAAACGCAGTTTGCTCCAGGACAATGGGCAGGGATTGTTCTAGACGAACCAATTGGTAAAAACGATGGCTCTGTGGCTGGAGTTCGCTATTTCCAGTGTGAACCCTTGAGGGGAATATTTACAAGACCGTCAAAATTGTCAAGAAAAGTGCTGACAGAAGATGAAGCCAATGGTACTCAGACAGCTCATGCATCTAGAGCTACATCACCAACCTCCACATCAACTGCCAGTGCGGTGTCCGCATCCCCTGCTGCACTTCTCCCGTCAGGAATCCCACAGAAAACATCACCACTCGCTGCTAAAGAACATTCTACTCCTTCTCAGTTTAGCAATCTTTCAAAAACTGCAAGTGGATCTGTATCTAATCTGTCTGAGGCTGGATCACTAAAGAAAGGAGAAAGGGAGCTCAAAATCGGAGATCGAGTTCTG
Seq A exon
GTGGGTGGAACAAAAGCTGGAGTTGTGCGTTTCTTGGGAGAAACTGACTTTGCTAAAGGAGAATGGTGTGGGGTAGAGCTGGATGAACCTCTGGGAAAGAATGATGGAGCTGTTGCTGGAACAAG
Seq C2 exon
ATACTTTCAGTGTCAGCCAAGATACGGTTTGTTTGCTCCGGTCCACAAAGTTACAAAGATTGGATTCCCATCGACTACCCCGGCAAAAGCGAAGACAACTGTGCGAAAAGTGGTTGCGACTCCCGCAGCCCTGAAACGTAGCCCGAGTGCATCTTCCCTGAGCTCTCTCAGTTCTGTGGCATCTTCAGTAAGCAGCAAGCCGAGCCGTACAGGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-'3-4,'3-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.024 C2=0.274
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=34.6),PF0130220=CAP_GLY=PU(7.6=2.6)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=24.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACATCACCACTCGCTGCT
R:
TCGCACAGTTGTCTTCGCTTT
Band lengths:
256-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]