Special

MmuEX6020815 @ mm9

Exon Skipping

Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:124096092-124104029:-
Coord C1 exon
chr5:124103461-124104029
Coord A exon
chr5:124097850-124097974
Coord C2 exon
chr5:124096092-124096314
Length
125 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTTTTCCTCTTGTAGGTT
3' ss Score
13.12
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGGAGTTTGTGGATGACTTTCGAGTTGGAGAACGTGTTTGGGTGAACGGGAATAAGCCCGGATTTATCCAGTTTCTTGGGGAAACTCAGTTCGCACCAGGCCAGTGGGCTGGGATTGTTTTAGATGAACCCATAGGGAAGAACGATGGCTCTGTGGCGGGAGTGCGGTATTTCCAGTGTGAACCTTTAAAGGGCATATTCACCCGACCTTCAAAGCTAACGAGGAAGGTGCAGGCAGAAGATGAAGCCAACGGCCTGCAGGCAGCTCCTGGGAGAACTGCTTCACCTCTGTCCACTGCTGCAGCTACCATGGTGTCTTCTTCTCCAGCCACTCCCTCAAATATTCCCCACAAACCGTCCCAGTCAACGGCAAAAGAACCTTCGGCTACACCTCAAATTAGCAACCTCACAAAAACTGCCAGTGAGTCGATCTCCAACCTTTCAGAGGCTGGCTCTGTCAAGAAGGGGGAGCGGGAGCTCAAGGTCGGAGACAGGGTGCTG
Seq A exon
GTTGGTGGCACTAAGGCTGGCGTAGTCCGCTTTCTTGGCGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGTGTGGAGTTAGACGAGCCTTTGGGGAAGAACGATGGTGCTGTGGCCGGAACAAG
Seq C2 exon
GTATTTTCAGTGTCAACCCAAATATGGATTGTTCGCTCCTGTCCACAAAGTGACAAAGATTGGCTTCCCGTCTACTACCCCAGCCAAAGCCAAAGCCGCCGCTGTGAGGCGAGTGATGGCCGCCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAACCCAGCCGGACAGGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.662 A=0.048 C2=0.449
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0130220=CAP_GLY=WD(100=34.7),PF0130220=CAP_GLY=PU(7.6=2.6)

							
A:
PF0130220=CAP_GLY=FE(62.1=100)

							
C2:
PF0130220=CAP_GLY=PD(27.3=24.0),PF041569=IncA=PU(18.7=38.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000031382





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000068241, ENSMUSP00000107186, ENSMUSP00000107190, ENSMUSP00000107192, ENSMUSP00000115965, ENSMUSP00000119641, ENSMUSP00000121425
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr12:122363983-122364107 
HIGH PSI
HsaEX0015669
(CLIP1)
Human
(hg19)
chr12:122848530-122848654 
HIGH PSI
HsaEX0015669
(CLIP1)
Rat
(rn6)
chr12:38383542-38383666 
HIGH PSI
RnoEX6064380
(Clip1)
Cow
(bosTau6)
chr17:55291944-55292068 
HIGH PSI
BtaEX6072472
(CLIP1)
Chicken
(galGal4)
chr15:5850832-5850956 
HIGH PSI
GgaEX1015742
(CLIP1)
Chicken
(galGal3)
chr15:5906991-5907115 
HIGH PSI
GgaEX1015742
(CLIP1_CHICK)
Zebrafish
(danRer10)
chr5:66558808-66558932 
HIGH PSI
DreEX6014507
(clip1a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGTGTCTTCTTCTCCAGCCA

				
R: 
ACTTTGTGGACAGGAGCGAAC

				
Band lengths: 
242-367

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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