MmuEX1006968 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123576730-123579502:-
Coord C1 exon
chr5:123579112-123579502
Coord A exon
chr5:123578224-123578499
Coord C2 exon
chr5:123576730-123578128
Length
276 bp
Sequences
Splice sites
3' ss Seq
ACAATGTGTCTTCTTTTCAGATT
3' ss Score
10.85
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
Exon sequences
Seq C1 exon
TGATGACCAGGAAAAGCAGTCCAAGAAGAAACCCCGCCTCTTCTGTGACATCTGTGACTGCTTTGACCTCCACGATACAGAGGACTGTCCCACCCAGGCACAGATGTCGGAAGATCCTCCCCATTCCACTCACCATGGCAGCCGGAGCGAGGAGCGGCCATACTGTGAGATCTGTGAGATGTTTGGGCACTGGGCAACCAACTGCAATGACGACGAGACCTTCTGAGGAAGCCGGGAGGGCAGGAAGGGCTTCCCCGACAAACGCCGGCTCCTCAGCAGCTCCCGCCAGCATTGGTGTGCAACTTCAGAAGAGCTCCTTATTTTTTGACCCCTGTCAACAAATCTGAGAAAATATTTTGATCTTCAACAAGTTTCCCTTTCATTTCCCCTC
Seq A exon
ATTTTTTTACCTTTATGAAAAAGAAAACATCTAAAGGCTCACCAGCATGTGACTGACTGGGCCCAAGATGGGCTCTGCGGTGGTCTCTGCTGTGAGGTTCCAGCTATCGTCTTTGTCTCCATGATGTTTCTTAGCCAGATCGGAGTAGCTGGAAGAACAGTCTCCGGCTCCTTGCTTGTGTTTCCCTTCCTTAGCAGATAACCCCAGCAGCAAACTAAGCCACTCTTCAGAGAGCTAAGCTAACTGATCTACAACCCTCCTTTATACATTTGTGGG
Seq C2 exon
ATAAAACAAAGGACCTCAACCAACTGAAGAGTTGACCCCGCCAGTCTGCGTCTCTCTGTCTTCACTTGAATGTCTTTGAGAATATGTAAAAAGGAGCCACATGCACCTCCACGCAGTGTGCAGGACGAGAACTTCCGTCATTGTATATAGGCCTCTGCCCCGTCTCCCCTTAAGGTTATCCACTGTGCTTGATGAGTGAGCAGTCAATACATCTGCTGCCCGTCGGCATTCTGGGTTAATAAAACTATAGGAATTATTTCACAAACAAACTATGGAAAGCAGTATTAAAATCTGAGTTCTGTATCTACTTTAATAAATGTTTTGGGTCTCTTTGGTTGGTTGGTTGGTTTTTGGCAGTGGTAGTAAACACATAATATTCTTAGGATTATTTGTCATTTTTTTTTCTTCAAGTAGGAAAGCCCTTTAGATTCCAAAGGCAATCCATTACTCCCTCTACCACGGAGCCCCAATGTCAGGTCCCCAAATAGCTCCTTTCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCCATACTGTGAGATCT
R:
AGACAGAGAGACGCAGACTGG
Band lengths:
300-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types